CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 5
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08451	Canola	endoplasmic reticulum, extracellular	95.09	95.09
CDY50569	Canola	extracellular, vacuole	74.23	74.46
CDY52623	Canola	extracellular, vacuole	73.62	73.85
CDY08450	Canola	extracellular	69.94	70.59
CDY42131	Canola	extracellular	69.94	70.59
CDY42130	Canola	extracellular	69.94	69.72
CDY08448	Canola	extracellular	68.71	68.5
CDY42129	Canola	cytosol	65.34	65.74
CDY05006	Canola	extracellular	60.12	60.49
CDY14065	Canola	extracellular	58.28	58.64
CDX70058	Canola	extracellular	50.92	49.7
CDX98965	Canola	extracellular	50.61	49.7
CDY58884	Canola	extracellular	50.31	49.55
CDX70059	Canola	extracellular	50.31	49.1
CDY58887	Canola	extracellular	49.69	49.09
CDX98966	Canola	extracellular	49.69	48.5
CDX70057	Canola	extracellular	49.69	48.21
CDX98967	Canola	extracellular	49.69	48.21
CDX70060	Canola	extracellular	49.08	48.19
CDY58888	Canola	extracellular	50.0	47.66
CDX81023	Canola	extracellular	49.08	46.78
CDY58889	Canola	extracellular	48.16	45.24
CDX98968	Canola	endoplasmic reticulum, extracellular, vacuole	50.0	42.34
CDX70056	Canola	extracellular	49.39	39.75
CDX85681	Canola	extracellular	32.82	31.01
CDX91155	Canola	extracellular	32.52	30.64
CDY60388	Canola	extracellular	33.44	29.86
CDX73812	Canola	endoplasmic reticulum, extracellular, vacuole	33.74	29.57
CDY00787	Canola	endoplasmic reticulum, extracellular, vacuole	33.74	29.57
CDY06385	Canola	extracellular	32.82	29.32
CDY19601	Canola	extracellular	32.82	29.32
CDY52664	Canola	extracellular	33.13	28.95
CDY27559	Canola	extracellular	32.21	28.77
CDY50534	Canola	extracellular, vacuole	32.82	28.69
CDY53975	Canola	extracellular	32.21	28.15
CDY68308	Canola	extracellular	32.21	28.07
CDY69775	Canola	extracellular, plasma membrane	32.21	27.85
CDY69275	Canola	extracellular	31.9	27.81
CDX81022	Canola	extracellular, plasma membrane	41.72	26.88
CDY38783	Canola	extracellular	26.69	21.22
CDY15279	Canola	plastid	27.61	21.13
CDY40923	Canola	extracellular, vacuole	29.75	20.68
CDY11623	Canola	extracellular	26.38	20.57
CDY64876	Canola	extracellular, vacuole	34.36	19.21
CDX93758	Canola	plastid	15.03	19.07
CDX80361	Canola	extracellular, vacuole	34.05	18.91
CDX88024	Canola	extracellular, vacuole	33.44	18.57
CDX93759	Canola	endoplasmic reticulum, extracellular, vacuole	9.2	18.4
CDY16850	Canola	plastid	25.77	16.97

Protein Annotations

EnsemblPlants:CDY42127	EnsemblPlantsGene:GSBRNA2T00074305001	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_N_plant-typ	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	PANTHER:PTHR44138
PFAM:PF08263	PFAM:PF13855	PFscan:PS51257	ProteinID:CDY42127	ProteinID:CDY42127.1	SignalP:SignalP-noTM
SUPFAM:SSF52058	UniParc:UPI0004EF2351	UniProt:A0A078HWD9	MapMan:26.8.3.4	:	:

Description

BnaC05g40920DBnaC05g40920D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HWD9]

Coordinates

chrLK032516:-:39343..40873

Molecular Weight (calculated)

36296.1 Da

IEP (calculated)

10.130

GRAVY (calculated)

-0.088

Length

326 amino acids

Sequence
(BLAST)

001: MKLLLHLSIF FAILFISLPS SYSCNSVEKN ALLQIKKSFN NPRKFSSWNP QTDCCTTWSG VKCTNGRVTD LSLFSSKLYG QIPDQIGDLL ELRSLFLTYL
101: PHLTGNIPRT ITKLKNLDSL ILRHNNLSGP IPDNIGELKK LSFLDLSYNQ FTGPIPGSLS QMPMLETIKI DHNKLTGSVP NSFGSFVGNV PNLYLSNNKL
201: SGKIPSSLSK NDFNGVFLSK NSFTGDGSMF FGRNKSTVSL DLSRNMFEFD LSKVQFARGI VDLDLSHNRI FGSLPRELIE LRGLKLFNVS HNRLCGKIPR
301: GGLLQSFKSY VFAHNRCLCG APLKAC

Best Arabidopsis Sequence Match ( AT3G12145.1 )
(BLAST)

001: MKLFVHLSIF FSILFITLPS SYSCTENDKN ALLQIKKALG NPPLLSSWNP RTDCCTGWTG VECTNRRVTG LSVTSGEVSG QISYQIGDLV DLRTLDFSYL
101: PHLTGNIPRT ITKLKNLNTL YLKHTSLSGP IPDYISELKS LTFLDLSFNQ FTGPIPGSLS QMPKLEAIQI NDNKLTGSIP NSFGSFVGNV PNLYLSNNKL
201: SGKIPESLSK YDFNAVDLSG NGFEGDAFMF FGRNKTTVRV DLSRNMFNFD LVKVKFARSI VSLDLSQNHI YGKIPPALTK LHLEHFNVSD NHLCGKIPSG
301: GLLQTFEPSA FAHNICLCGT PLKAC

Arabidopsis Description

FLR1FTM4 [Source:UniProtKB/TrEMBL;Acc:A0A178V9V7]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.