Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 2
- extracellular 4
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 3
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY05006 | Canola | extracellular | 93.83 | 93.83 |
| CDY50569 | Canola | extracellular, vacuole | 61.42 | 61.23 |
| CDY52623 | Canola | extracellular, vacuole | 61.11 | 60.92 |
| CDY42130 | Canola | extracellular | 58.95 | 58.41 |
| CDY42127 | Canola | extracellular | 58.64 | 58.28 |
| CDY08451 | Canola | endoplasmic reticulum, extracellular | 58.64 | 58.28 |
| CDY08448 | Canola | extracellular | 58.33 | 57.8 |
| CDY08450 | Canola | extracellular | 57.1 | 57.28 |
| CDY42131 | Canola | extracellular | 55.25 | 55.42 |
| CDY42129 | Canola | cytosol | 54.63 | 54.63 |
| CDX70058 | Canola | extracellular | 51.23 | 49.7 |
| CDY58884 | Canola | extracellular | 50.62 | 49.55 |
| CDX70059 | Canola | extracellular | 50.93 | 49.4 |
| CDX98965 | Canola | extracellular | 50.62 | 49.4 |
| CDX98966 | Canola | extracellular | 50.62 | 49.1 |
| CDX70060 | Canola | extracellular | 50.0 | 48.8 |
| CDY58887 | Canola | extracellular | 49.07 | 48.18 |
| CDX70057 | Canola | extracellular | 49.69 | 47.92 |
| CDX81023 | Canola | extracellular | 49.38 | 46.78 |
| CDX98967 | Canola | extracellular | 48.46 | 46.73 |
| CDY58888 | Canola | extracellular | 49.07 | 46.49 |
| CDY58889 | Canola | extracellular | 47.53 | 44.38 |
| CDX98968 | Canola | endoplasmic reticulum, extracellular, vacuole | 48.77 | 41.04 |
| CDX70056 | Canola | extracellular | 48.15 | 38.52 |
| CDX91155 | Canola | extracellular | 30.86 | 28.9 |
| CDX85681 | Canola | extracellular | 30.56 | 28.7 |
| CDY60388 | Canola | extracellular | 32.1 | 28.49 |
| CDY52664 | Canola | extracellular | 32.72 | 28.42 |
| CDY19601 | Canola | extracellular | 31.79 | 28.22 |
| CDY00787 | Canola | endoplasmic reticulum, extracellular, vacuole | 32.1 | 27.96 |
| CDX73812 | Canola | endoplasmic reticulum, extracellular, vacuole | 32.1 | 27.96 |
| CDY27559 | Canola | extracellular | 31.48 | 27.95 |
| CDY06385 | Canola | extracellular | 31.17 | 27.67 |
| CDX81022 | Canola | extracellular, plasma membrane | 43.21 | 27.67 |
| CDY50534 | Canola | extracellular, vacuole | 31.79 | 27.61 |
| CDY68308 | Canola | extracellular | 30.25 | 26.2 |
| CDY69775 | Canola | extracellular, plasma membrane | 30.25 | 25.99 |
| CDY53975 | Canola | extracellular | 29.63 | 25.74 |
| CDY69275 | Canola | extracellular | 29.32 | 25.4 |
| CDY38783 | Canola | extracellular | 25.31 | 20.0 |
| CDY15279 | Canola | plastid | 26.23 | 19.95 |
| CDY40923 | Canola | extracellular, vacuole | 28.7 | 19.83 |
| CDX93759 | Canola | endoplasmic reticulum, extracellular, vacuole | 9.57 | 19.02 |
| CDY11623 | Canola | extracellular | 24.38 | 18.9 |
| CDX88024 | Canola | extracellular, vacuole | 31.79 | 17.55 |
| CDX93758 | Canola | plastid | 13.89 | 17.51 |
| CDX80361 | Canola | extracellular, vacuole | 31.48 | 17.38 |
| CDY64876 | Canola | extracellular, vacuole | 31.17 | 17.32 |
| CDY16850 | Canola | plastid | 24.38 | 15.96 |
Protein Annotations
| EnsemblPlants:CDY14065 | EnsemblPlantsGene:GSBRNA2T00078598001 | Gene3D:3.80.10.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR001611 | InterPro:IPR032675 | InterPro:LRR_N_plant-typ | InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt | PANTHER:PTHR44138 |
| PFAM:PF08263 | PFAM:PF13855 | ProteinID:CDY14065 | ProteinID:CDY14065.1 | SEG:seg | SignalP:SignalP-noTM |
| SUPFAM:SSF52058 | UniParc:UPI0004EECFE4 | UniProt:A0A078FI20 | MapMan:26.8.3.4 | : | : |
Description
BnaC02g01820DBnaC02g01820D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FI20]
Coordinates
chrLK032040:+:249417..250664
Molecular Weight (calculated)
36229.9 Da
IEP (calculated)
9.548
GRAVY (calculated)
-0.050
Length
324 amino acids
Sequence
(BLAST)
(BLAST)
001: MRMKLLNPSL FFFFMFFPCS RSCNSNDKTT LLKIKKSLNN PQILNSWDAK TDCCTNWTGV VCTHRRITGL TIAAGDVVGQ IAEEIGDLTD LVILDWSSLS
101: RLRGTIPRSI TKLKNLVYLR FRITELSGPV PEYISELRNV TFLNLSFNRF NGSIPGSISQ MQRLETIQLS HNKLTGSIPE SFGSFVGKIP KLYLGNNHLS
201: GEIPKSLSKT NFNTVILSGN NFSGNASMFF GHNKTTVTLD LSRNNFHFDL SKVKLAKSLV SLDISHNRVF GELPLELTNL RLDHFNISFN SLCGSIPQGG
301: LIQNFEVYEF SNNLCVCGAP LKRC
101: RLRGTIPRSI TKLKNLVYLR FRITELSGPV PEYISELRNV TFLNLSFNRF NGSIPGSISQ MQRLETIQLS HNKLTGSIPE SFGSFVGKIP KLYLGNNHLS
201: GEIPKSLSKT NFNTVILSGN NFSGNASMFF GHNKTTVTLD LSRNNFHFDL SKVKLAKSLV SLDISHNRVF GELPLELTNL RLDHFNISFN SLCGSIPQGG
301: LIQNFEVYEF SNNLCVCGAP LKRC
001: MKLFVHLSIF FSILFITLPS SYSCTENDKN ALLQIKKALG NPPLLSSWNP RTDCCTGWTG VECTNRRVTG LSVTSGEVSG QISYQIGDLV DLRTLDFSYL
101: PHLTGNIPRT ITKLKNLNTL YLKHTSLSGP IPDYISELKS LTFLDLSFNQ FTGPIPGSLS QMPKLEAIQI NDNKLTGSIP NSFGSFVGNV PNLYLSNNKL
201: SGKIPESLSK YDFNAVDLSG NGFEGDAFMF FGRNKTTVRV DLSRNMFNFD LVKVKFARSI VSLDLSQNHI YGKIPPALTK LHLEHFNVSD NHLCGKIPSG
301: GLLQTFEPSA FAHNICLCGT PLKAC
101: PHLTGNIPRT ITKLKNLNTL YLKHTSLSGP IPDYISELKS LTFLDLSFNQ FTGPIPGSLS QMPKLEAIQI NDNKLTGSIP NSFGSFVGNV PNLYLSNNKL
201: SGKIPESLSK YDFNAVDLSG NGFEGDAFMF FGRNKTTVRV DLSRNMFNFD LVKVKFARSI VSLDLSQNHI YGKIPPALTK LHLEHFNVSD NHLCGKIPSG
301: GLLQTFEPSA FAHNICLCGT PLKAC
Arabidopsis Description
FLR1FTM4 [Source:UniProtKB/TrEMBL;Acc:A0A178V9V7]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.