CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, vacuole

Predictor Summary:

nucleus 1
extracellular 5
endoplasmic reticulum 4
vacuole 5
plasma membrane 4
golgi 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, vacuole
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93758	Canola	plastid	52.45	95.72
CDY15279	Canola	plastid	86.35	95.07
CDX93759	Canola	endoplasmic reticulum, extracellular, vacuole	32.84	94.48
Bra028006.1-P	Field mustard	endoplasmic reticulum, vacuole	96.38	94.36
AT1G33590.2	Thale cress	plastid	84.01	76.65
CDY38783	Canola	extracellular	58.21	66.59
CDY11623	Canola	extracellular	57.78	64.83
PGSC0003DMT400043544	Potato	extracellular	61.41	60.25
KRH56366	Soybean	nucleus	61.41	58.9
Solyc10g052880.1.1	Tomato	extracellular	59.91	58.79
VIT_18s0089g00010.t01	Wine grape	plasma membrane	65.67	32.25
CDX85681	Canola	extracellular	22.81	31.01
CDX91155	Canola	extracellular	22.81	30.92
CDY69275	Canola	extracellular	24.52	30.75
CDY52664	Canola	extracellular	24.31	30.56
CDY53975	Canola	extracellular	24.31	30.56
CDX70057	Canola	extracellular	21.75	30.36
CDY50534	Canola	extracellular, vacuole	24.09	30.29
CDX70058	Canola	extracellular	21.54	30.24
CDY52623	Canola	extracellular, vacuole	20.9	30.15
CDY42131	Canola	extracellular	20.68	30.03
CDY68308	Canola	extracellular	23.88	29.95
CDY05006	Canola	extracellular	20.68	29.94
CDY50569	Canola	extracellular, vacuole	20.68	29.85
CDY00787	Canola	endoplasmic reticulum, extracellular, vacuole	23.67	29.84
CDX73812	Canola	endoplasmic reticulum, extracellular, vacuole	23.67	29.84
CDX98967	Canola	extracellular	21.32	29.76
CDY42127	Canola	extracellular	20.68	29.75
CDX98966	Canola	extracellular	21.11	29.64
CDY58884	Canola	extracellular	20.9	29.61
CDY60388	Canola	extracellular	23.03	29.59
CDY27559	Canola	extracellular	23.03	29.59
CDY19601	Canola	extracellular	23.03	29.59
CDX70060	Canola	extracellular	20.9	29.52
CDY08451	Canola	endoplasmic reticulum, extracellular	20.47	29.45
CDY69775	Canola	extracellular, plasma membrane	23.67	29.44
CDY58887	Canola	extracellular	20.68	29.39
CDY42130	Canola	extracellular	20.47	29.36
CDX98965	Canola	extracellular	20.68	29.22
CDY58888	Canola	extracellular	21.11	28.95
CDY06385	Canola	extracellular	22.39	28.77
CDY08448	Canola	extracellular	20.04	28.75
CDX70059	Canola	extracellular	20.47	28.74
CDY14065	Canola	extracellular	19.83	28.7
CDX81023	Canola	extracellular	20.9	28.66
CDY08450	Canola	extracellular	19.4	28.17
CDY42129	Canola	cytosol	19.19	27.78
CDY64876	Canola	extracellular, vacuole	33.69	27.1
CDY58889	Canola	extracellular	20.04	27.09
CDX80361	Canola	extracellular, vacuole	33.48	26.75
CDY16850	Canola	plastid	28.14	26.67
CDX88024	Canola	extracellular, vacuole	33.26	26.58
CDX98968	Canola	endoplasmic reticulum, extracellular, vacuole	21.11	25.71
CDX70056	Canola	extracellular	21.11	24.44
CDX81022	Canola	extracellular, plasma membrane	18.12	16.8

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	UniProt:A0A078HVV3	EnsemblPlants:CDY40923	ProteinID:CDY40923	ProteinID:CDY40923.1
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00071975001	InterPro:IPR001611
InterPro:IPR032675	InterPro:LRR_N_plant-typ	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_typical-subtyp	PFAM:PF08263
PFAM:PF13855	PANTHER:PTHR45271	SMART:SM00369	SUPFAM:SSF52047	SignalP:SignalP-noTM	UniParc:UPI0004EE3CA4
SEG:seg	:	:	:	:	:

Description

BnaC06g30610DBnaC06g30610D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HVV3]

Coordinates

chrLK032484:-:145333..146772

Molecular Weight (calculated)

51190.4 Da

IEP (calculated)

9.760

GRAVY (calculated)

0.116

Length

469 amino acids

Sequence
(BLAST)

001: MNSSYSFSVF IFAAVIIIRC LNPIKAATCH PDDEAGLLAF KSGITRDPSG ILSSWKKGTA CCSWNGITCL TGDRVTALTV SGQSEVAGSF LSGTISSSLA
101: KLQHLDGIYL MNLKNITGPF PQFLFRLPQL KFVYIENNRL SGPLPVNIGS LSQIEAFSLE GNRFTGPIPT SISNLTKLSQ LNLGGIANLK LMSFLNLGGN
201: RLSGTIPDIF KSMPELRSLV LSRNGFSGSL PPSIASLAPI LRFLEVGRNK LSGKIPDYLS RFKALDTLDL SRNQFSGVVP KSFANLTKIF NLDLSHNLLT
301: DPFPALYVKG IESLDLSYNK FHLKTIPKWV TSSPIIFSLK LAKCGITMSL DDWKPAEYYF YDFIDLSQNE ISGSPARFLN QTEYLVEFRA PGNKLRFDMG
401: KLTFAKTLKT LHLSRNLVFG MVPATVAGLQ TLNVSQNHLC GKLPTTKFPA SAFAGNDCLC GPPLSPCKV

Best Arabidopsis Sequence Match ( AT1G33590.2 )
(BLAST)

001: MQMDWSKTST LTSQLSSNLF PTTNSSLLSI NTTQFTTMNS SFTLFIFTFV IFLQCLNPTG AATCHPDDEA GLLAFKAGIT RDPSGILSSW KKGTACCSWN
101: GVTCLTTDRV SALSVAGQAD VAGSFLSGTL SPSLAKLKHL DGIYFTDLKN ITGSFPQFLF QLPNLKYVYI ENNRLSGTLP ANIGALSQLE AFSLEGNRFT
201: GPIPSSISNL TLLTQLKLGN NLLTGTIPLG VANLKLMSYL NLGGNRLTGT IPDIFKSMPE LRSLTLSRNG FSGNLPPSIA SLAPILRFLE LGHNKLSGTI
301: PNFLSNFKAL DTLDLSKNRF SGVIPKSFAN LTKIFNLDLS HNLLTDPFPV LNVKGIESLD LSYNQFHLNT IPKWVTSSPI IFSLKLAKCG IKMSLDDWKP
401: AQTFYYDFID LSENEITGSP ARFLNQTEYL VEFKAAGNKL RFDMGKLTFA KTLTTLDISR NLVFGKVPAM VAGLKTLNVS HNHLCGKLPV TKFPASAFVG
501: NDCLCGSPLS PCKA

Arabidopsis Description

Leucine-rich repeat (LRR) family protein [Source:TAIR;Acc:AT1G33590]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.