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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, extracellular, vacuole

Predictor Summary:
  • extracellular 6
  • endoplasmic reticulum 6
  • vacuole 6
  • plasma membrane 5
  • golgi 5
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, extracellular, vacuole
Any Predictor:secretory
BaCelLo:secretory
iPSORT:secretory
MultiLoc:endoplasmic reticulum
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:vacuole
YLoc:extracellular
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX70056 Canola extracellular 93.51 88.89
CDY58887 Canola extracellular 66.75 77.88
CDY58884 Canola extracellular 65.45 76.13
CDY58889 Canola extracellular 67.79 75.22
CDY58888 Canola extracellular 66.23 74.56
AT5G06870.1 Thale cress extracellular 63.9 74.55
CDX81023 Canola extracellular 65.71 73.98
CDX98965 Canola extracellular 62.34 72.29
CDX70060 Canola extracellular 62.08 71.99
CDX70058 Canola extracellular 61.56 70.96
CDX98966 Canola extracellular 60.52 69.76
CDX70059 Canola extracellular 60.26 69.46
CDX70057 Canola extracellular 60.0 68.75
CDX98967 Canola extracellular 59.74 68.45
KRH12977 Soybean nucleus 51.43 58.41
PGSC0003DMT400057136 Potato extracellular 48.31 56.71
Solyc07g065090.1.1 Tomato extracellular 48.05 56.57
VIT_08s0007g07690.t01 Wine grape extracellular 49.35 55.23
KRG95348 Soybean mitochondrion 48.31 52.99
CDY52623 Canola extracellular, vacuole 44.68 52.92
CDY50569 Canola extracellular, vacuole 44.42 52.62
CDY05006 Canola extracellular 43.12 51.23
TraesCS3A01G459300.1 Wheat cytosol 19.48 50.68
CDY42127 Canola extracellular 42.34 50.0
CDX81022 Canola extracellular, plasma membrane 65.45 49.8
CDY42131 Canola extracellular 41.56 49.54
CDY08451 Canola endoplasmic reticulum, extracellular 41.82 49.39
CDY42130 Canola extracellular 41.56 48.93
KRH12976 Soybean cytosol 47.27 48.92
CDY14065 Canola extracellular 41.04 48.77
CDY08448 Canola extracellular 41.3 48.62
CDY08450 Canola extracellular 39.48 47.06
GSMUA_Achr9P12430_001 Banana extracellular 36.88 47.02
CDY42129 Canola cytosol 38.96 46.3
TraesCS3A01G459200.1 Wheat extracellular 39.74 45.0
TraesCS3D01G451800.1 Wheat extracellular 39.48 44.71
TraesCS3D01G451400.1 Wheat extracellular 38.96 44.25
TraesCS3B01G498900.1 Wheat extracellular 38.7 43.82
Zm00001d035753_P001 Maize extracellular 38.7 43.7
TraesCS3D01G451900.1 Wheat extracellular 38.44 43.66
TraesCS3D01G451500.1 Wheat extracellular 37.66 43.41
HORVU3Hr1G098610.1 Barley extracellular 37.66 43.15
EES17528 Sorghum extracellular 37.92 43.07
Os05t0104200-01 Rice extracellular 34.29 42.72
HORVU3Hr1G098730.2 Barley endoplasmic reticulum, extracellular, mitochondrion 39.48 42.58
TraesCS3A01G459000.1 Wheat extracellular 37.66 42.52
EES17529 Sorghum extracellular 37.4 42.23
Os05t0104150-01 Rice extracellular 37.14 41.81
TraesCS1A01G012600.1 Wheat extracellular 36.1 41.37
TraesCS1D01G010800.1 Wheat extracellular 36.1 41.25
TraesCS7D01G200000.1 Wheat cytosol 33.51 41.21
Os05t0104600-01 Rice extracellular 35.84 40.71
TraesCS1B01G017300.1 Wheat extracellular 35.06 40.06
Zm00001d035756_P001 Maize vacuole 35.84 39.43
TraesCS7B01G103900.1 Wheat extracellular 33.25 37.98
HORVU1Hr1G002410.1 Barley endoplasmic reticulum, vacuole 35.58 37.23
TraesCS2D01G470400.1 Wheat extracellular 32.99 37.13
TraesCS2A01G470500.1 Wheat extracellular 32.73 36.84
TraesCS2D01G470500.1 Wheat extracellular, vacuole 32.47 36.44
TraesCS2B01G493300.1 Wheat extracellular 32.47 36.23
HORVU2Hr1G106620.1 Barley extracellular 31.95 36.18
TraesCS2B01G493200.1 Wheat endoplasmic reticulum, extracellular 31.69 35.67
EES17527 Sorghum extracellular, plastid 35.84 35.11
Os05t0104700-01 Rice extracellular 36.1 34.66
TraesCS2A01G470600.1 Wheat extracellular 30.39 34.62
CDY52664 Canola extracellular 27.79 28.69
CDY50534 Canola extracellular, vacuole 27.27 28.15
CDX73812 Canola endoplasmic reticulum, extracellular, vacuole 27.01 27.96
CDY00787 Canola endoplasmic reticulum, extracellular, vacuole 27.01 27.96
CDY60388 Canola extracellular 26.49 27.95
CDY19601 Canola extracellular 26.49 27.95
CDY06385 Canola extracellular 25.97 27.4
CDY27559 Canola extracellular 25.97 27.4
CDX85681 Canola extracellular 24.16 26.96
CDX91155 Canola extracellular 24.16 26.88
TraesCS7A01G197500.1 Wheat extracellular 12.47 26.23
CDY53975 Canola extracellular 24.68 25.47
CDY68308 Canola extracellular 24.68 25.4
CDY69775 Canola extracellular, plasma membrane 24.68 25.2
CDY69275 Canola extracellular 23.64 24.33
CDY15279 Canola plastid 23.38 21.13
CDY40923 Canola extracellular, vacuole 25.71 21.11
CDY38783 Canola extracellular 22.34 20.98
CDY11623 Canola extracellular 22.08 20.33
CDX93759 Canola endoplasmic reticulum, extracellular, vacuole 8.05 19.02
CDX88024 Canola extracellular, vacuole 28.83 18.91
CDX80361 Canola extracellular, vacuole 28.57 18.74
CDY64876 Canola extracellular, vacuole 28.31 18.7
CDX93758 Canola plastid 12.47 18.68
CDY16850 Canola plastid 22.08 17.17
Protein Annotations
EnsemblPlants:CDX98968EnsemblPlantsGene:GSBRNA2T00107084001Gene3D:3.80.10.10GO:GO:0003674GO:GO:0005488GO:GO:0005515
InterPro:IPR001611InterPro:IPR032675InterPro:LRR_N_plant-typInterPro:LRR_dom_sfInterPro:Leu-rich_rptPANTHER:PTHR44138
PFAM:PF08263PFAM:PF13855PFscan:PS51450PRINTS:PR00019ProteinID:CDX98968ProteinID:CDX98968.1
SEG:segSignalP:SignalP-noTMSUPFAM:SSF52058UniParc:UPI0004EE3728MapMan:26.8.3.4:
Description
BnaC09g48670D
Coordinates
chrLK031907:+:845149..846878
Molecular Weight (calculated)
43466.7 Da
IEP (calculated)
9.138
GRAVY (calculated)
-0.189
Length
385 amino acids
Sequence
(BLAST)
001: MSKATTLLLF LFFTLFLTTS LSKDLCHKDD KNTLLKIKKS LSNPYNNIIS WDPKEDCCTW FNVDCGDATV NHRVTSLHIS YDQISAQIPP EVGDLPYLQT
101: LIFRKLSNLT GPIQPTIAKL KYLRFLRLSW TNLTGPIPDF FSQLKNLQYI DLSYNDLSGS IPSSLALLPK LEYLELSRNK LTGPIPELFG SFPGKAPDLF
201: LSHNQLNGSI PKSLGKLDFY RIDLSRNKLK GDASMLFGTN KKTWTIDLSR NMFQFDISKV KVAKTVNLLD LNHNGITGSI PVQWTELSLQ TFNVSYNRLC
301: GPIPKGGELQ RDGAYAYLHN KCLCGAPLQR CNYETSHSCS TKKDFESMPE KALLKTVAPD LDLVITRRNV VNSAQYLMIP LELRL
Best Arabidopsis Sequence Match ( AT5G06870.1 )
(BLAST)
001: MDKTMTLFLL LSTLLLTTSL AKDLCHKDDK TTLLKIKKSL NNPYHLASWD PKTDCCSWYC LECGDATVNH RVTSLIIQDG EISGQIPPEV GDLPYLTSLI
101: FRKLTNLTGH IQPTIAKLKN LTFLRLSWTN LTGPVPEFLS QLKNLEYIDL SFNDLSGSIP SSLSSLRKLE YLELSRNKLT GPIPESFGTF SGKVPSLFLS
201: HNQLSGTIPK SLGNPDFYRI DLSRNKLQGD ASILFGAKKT TWIVDISRNM FQFDLSKVKL AKTLNNLDMN HNGITGSIPA EWSKAYFQLL NVSYNRLCGR
301: IPKGEYIQRF DSYSFFHNKC LCGAPLPSCK
Arabidopsis Description
PGIP2PGIP2 [Source:UniProtKB/TrEMBL;Acc:A0A178UDM1]
SUBAcon: [extracellular]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.