Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 7
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 4
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G103900.1 | Wheat | extracellular | 78.14 | 42.43 |
| TraesCS7D01G200000.1 | Wheat | cytosol | 66.67 | 38.98 |
| TraesCS3A01G459200.1 | Wheat | extracellular | 51.91 | 27.94 |
| EES17528 | Sorghum | extracellular | 46.45 | 25.07 |
| TraesCS3A01G459000.1 | Wheat | extracellular | 45.9 | 24.63 |
| TraesCS1A01G012600.1 | Wheat | extracellular | 41.53 | 22.62 |
| TraesCS2A01G470500.1 | Wheat | extracellular | 37.7 | 20.18 |
| VIT_13s0064g01370.t01 | Wine grape | extracellular | 34.97 | 19.28 |
| TraesCS2A01G470600.1 | Wheat | extracellular | 35.52 | 19.23 |
| GSMUA_Achr9P12430_001 | Banana | extracellular | 30.6 | 18.54 |
| TraesCS5A01G266200.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 31.69 | 18.3 |
| KRG95348 | Soybean | mitochondrion | 34.43 | 17.95 |
| AT5G06870.1 | Thale cress | extracellular | 32.24 | 17.88 |
| Bra009234.1-P | Field mustard | extracellular | 31.69 | 17.52 |
| CDX70060 | Canola | extracellular | 31.69 | 17.47 |
| CDX70058 | Canola | extracellular | 31.69 | 17.37 |
| Bra009236.1-P | Field mustard | extracellular | 31.15 | 17.07 |
| TraesCS2A01G199600.1 | Wheat | extracellular | 31.15 | 17.01 |
| CDX98967 | Canola | extracellular | 31.15 | 16.96 |
| CDX70057 | Canola | extracellular | 31.15 | 16.96 |
| Bra009237.1-P | Field mustard | extracellular | 31.15 | 16.96 |
| CDX81023 | Canola | extracellular | 31.69 | 16.96 |
| CDX98965 | Canola | extracellular | 30.6 | 16.87 |
| KRH12977 | Soybean | nucleus | 31.15 | 16.81 |
| CDX98966 | Canola | extracellular | 30.6 | 16.77 |
| Bra005917.1-P | Field mustard | extracellular | 31.15 | 16.67 |
| CDY58888 | Canola | extracellular | 31.15 | 16.67 |
| Solyc09g014590.2.1 | Tomato | extracellular | 28.42 | 16.67 |
| CDX70059 | Canola | extracellular | 30.05 | 16.47 |
| Bra009235.1-P | Field mustard | extracellular | 30.05 | 16.47 |
| AT5G06860.1 | Thale cress | extracellular | 29.51 | 16.36 |
| CDY58884 | Canola | extracellular | 28.96 | 16.01 |
| PGSC0003DMT400021883 | Potato | extracellular | 28.96 | 15.87 |
| KRH12976 | Soybean | cytosol | 32.24 | 15.86 |
| Bra005919.1-P | Field mustard | extracellular | 28.42 | 15.71 |
| Bra005916.1-P | Field mustard | extracellular | 29.51 | 15.56 |
| CDY58887 | Canola | extracellular | 27.87 | 15.45 |
| CDY58889 | Canola | extracellular | 28.96 | 15.27 |
| Solyc09g014480.1.1 | Tomato | extracellular | 27.87 | 15.22 |
| TraesCS7A01G189800.1 | Wheat | endoplasmic reticulum, extracellular | 22.4 | 14.54 |
| Bra009238.1-P | Field mustard | extracellular | 26.23 | 14.46 |
| CDX98968 | Canola | endoplasmic reticulum, extracellular, vacuole | 26.23 | 12.47 |
| TraesCS2A01G593600.1 | Wheat | endoplasmic reticulum, extracellular | 28.96 | 11.86 |
| CDX70056 | Canola | extracellular | 26.23 | 11.85 |
| TraesCS7A01G244600.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 24.04 | 11.58 |
| CDX81022 | Canola | extracellular, plasma membrane | 28.96 | 10.47 |
| Bra005918.1-P | Field mustard | extracellular | 6.56 | 5.85 |
| TraesCS3A01G459300.1 | Wheat | cytosol | 3.83 | 4.73 |
Protein Annotations
| EnsemblPlants:TraesCS7A01G197500.1 | EnsemblPlantsGene:TraesCS7A01G197500 | Gene3D:3.80.10.10 | InterPro:IPR032675 | InterPro:LRR_N_plant-typ | InterPro:LRR_dom_sf |
| PANTHER:PTHR44138 | PFAM:PF08263 | SEG:seg | SignalP:SignalP-noTM | SUPFAM:SSF52058 | TMHMM:TMhelix |
| MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr7A:-:157595879..157596430
Molecular Weight (calculated)
19136.3 Da
IEP (calculated)
5.546
GRAVY (calculated)
0.378
Length
183 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTPPSAYAF PGLLLLLLGG AVIVSAENNK DCHPSDKAAL LVVKSAFGNQ SHFASWTPST PCCERHDATC NDAGRVISLL FFVDFTLTGT IPNAMSGLVE
101: LLVLNLYYLP AISGHIPKGI AKLSKLTSLG ISLTSVSGPV PSFLGALTKL GVIDPMDRGR LDISGNLPSL GADELDPEPA MVM
101: LLVLNLYYLP AISGHIPKGI AKLSKLTSLG ISLTSVSGPV PSFLGALTKL GVIDPMDRGR LDISGNLPSL GADELDPEPA MVM
001: MDKTMTLFLL LSTLLLTTSL AKDLCHKDDK TTLLKIKKSL NNPYHLASWD PKTDCCSWYC LECGDATVNH RVTSLIIQDG EISGQIPPEV GDLPYLTSLI
101: FRKLTNLTGH IQPTIAKLKN LTFLRLSWTN LTGPVPEFLS QLKNLEYIDL SFNDLSGSIP SSLSSLRKLE YLELSRNKLT GPIPESFGTF SGKVPSLFLS
201: HNQLSGTIPK SLGNPDFYRI DLSRNKLQGD ASILFGAKKT TWIVDISRNM FQFDLSKVKL AKTLNNLDMN HNGITGSIPA EWSKAYFQLL NVSYNRLCGR
301: IPKGEYIQRF DSYSFFHNKC LCGAPLPSCK
101: FRKLTNLTGH IQPTIAKLKN LTFLRLSWTN LTGPVPEFLS QLKNLEYIDL SFNDLSGSIP SSLSSLRKLE YLELSRNKLT GPIPESFGTF SGKVPSLFLS
201: HNQLSGTIPK SLGNPDFYRI DLSRNKLQGD ASILFGAKKT TWIVDISRNM FQFDLSKVKL AKTLNNLDMN HNGITGSIPA EWSKAYFQLL NVSYNRLCGR
301: IPKGEYIQRF DSYSFFHNKC LCGAPLPSCK
Arabidopsis Description
PGIP2PGIP2 [Source:UniProtKB/TrEMBL;Acc:A0A178UDM1]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.