Factsheet for PGSC0003DMT400021883

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 9
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 5
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g014480.1.1	Tomato	extracellular	87.72	87.46
PGSC0003DMT400057136	Potato	extracellular	52.99	53.96
TraesCS3A01G459300.1	Wheat	cytosol	20.96	47.3
GSMUA_Achr9P12430_001	Banana	extracellular	40.72	45.03
VIT_13s0064g01370.t01	Wine grape	extracellular	44.61	44.88
TraesCS3A01G459200.1	Wheat	extracellular	44.31	43.53
TraesCS3D01G451800.1	Wheat	extracellular	44.31	43.53
HORVU3Hr1G098610.1	Barley	extracellular	43.71	43.45
TraesCS3D01G451500.1	Wheat	extracellular	42.52	42.52
TraesCS3D01G451900.1	Wheat	extracellular	43.11	42.48
TraesCS3B01G498900.1	Wheat	extracellular	43.11	42.35
TraesCS3D01G451400.1	Wheat	extracellular	42.81	42.18
EES17529	Sorghum	extracellular	42.81	41.94
TraesCS3A01G459000.1	Wheat	extracellular	42.22	41.35
Zm00001d035753_P001	Maize	extracellular	42.22	41.35
HORVU3Hr1G098730.2	Barley	endoplasmic reticulum, extracellular, mitochondrion	44.01	41.18
TraesCS1A01G012600.1	Wheat	extracellular	41.32	41.07
TraesCS1D01G010800.1	Wheat	extracellular	41.32	40.95
Os05t0104200-01	Rice	extracellular	37.43	40.45
EES17528	Sorghum	extracellular	41.02	40.41
Os05t0104150-01	Rice	extracellular	41.32	40.35
HORVU2Hr1G106620.1	Barley	extracellular	41.02	40.29
TraesCS1B01G017300.1	Wheat	extracellular	40.42	40.06
TraesCS2B01G493200.1	Wheat	endoplasmic reticulum, extracellular	40.72	39.77
TraesCS2D01G470500.1	Wheat	extracellular, vacuole	40.72	39.65
TraesCS2D01G470400.1	Wheat	extracellular	40.42	39.47
Zm00001d035756_P001	Maize	vacuole	41.32	39.43
TraesCS2A01G470500.1	Wheat	extracellular	40.12	39.18
TraesCS2B01G493300.1	Wheat	extracellular	39.82	38.55
TraesCS2A01G470600.1	Wheat	extracellular	38.62	38.17
TraesCS7D01G200000.1	Wheat	cytosol	35.63	38.02
TraesCS7B01G103900.1	Wheat	extracellular	38.32	37.98
HORVU1Hr1G002410.1	Barley	endoplasmic reticulum, vacuole	41.32	37.5
Os05t0104600-01	Rice	extracellular	37.13	36.58
EES17527	Sorghum	extracellular, plastid	41.02	34.86
PGSC0003DMT400003166	Potato	extracellular, vacuole	33.23	30.49
Os05t0104700-01	Rice	extracellular	36.53	30.42
TraesCS7A01G197500.1	Wheat	extracellular	15.87	28.96
PGSC0003DMT400017733	Potato	extracellular	29.94	27.17
PGSC0003DMT400043544	Potato	extracellular	32.34	22.59
PGSC0003DMT400010749	Potato	extracellular	20.96	20.06
PGSC0003DMT400065091	Potato	extracellular	32.63	18.38
PGSC0003DMT400058200	Potato	extracellular, vacuole	32.63	17.14
PGSC0003DMT400009116	Potato	endoplasmic reticulum, extracellular	30.54	15.86

Protein Annotations

EntrezGene:102585477	MapMan:26.8.3.4	Gene3D:3.80.10.10	GO:GO:0000003	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0005886	GO:GO:0007275	GO:GO:0008134	GO:GO:0008150	GO:GO:0009628	GO:GO:0009791
GO:GO:0010228	GO:GO:0016020	GO:GO:0048471	GO:GO:0048510	GO:GO:0048574	InterPro:IPR001611
InterPro:IPR032675	InterPro:LRR_N_plant-typ	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_typical-subtyp	UniProt:M1AFU6
PFAM:PF00560	PFAM:PF08263	PFAM:PF13855	EnsemblPlantsGene:PGSC0003DMG400008492	PGSC:PGSC0003DMG400008492	EnsemblPlants:PGSC0003DMT400021883
PFscan:PS51450	PANTHER:PTHR44138	SMART:SM00369	SUPFAM:SSF52058	SignalP:SignalP-noTM	UniParc:UPI0002964A1A
RefSeq:XP_006366353.1	SEG:seg	:	:	:	:

Description

Polygalacturonase inhibiting protein [Source:PGSC_GENE;Acc:PGSC0003DMG400008492]

Coordinates

chr9:+:161301..162488

Molecular Weight (calculated)

37915.0 Da

IEP (calculated)

8.988

GRAVY (calculated)

-0.199

Length

334 amino acids

Sequence
(BLAST)

001: MKPSSSSILS ILSFSLLFLF QLSSSERCHP NDKKALLEFK KGLGNPEDLG NWDPKTDCCT DWYGPTIRCD EKTNRINVID FTKMDMAGYL SPAIGDLTYL
101: TTFSIHNVRN LTGPIPSTIV KLTNLEFFRI SQTNISGPVP EVLSKLKSLT YINLSYNKLV GTIPPSLSQL PHLEFLGLDR NKLSGPIPES FRKLAPNLTY
201: LYLGHNQLTG IVPTSFAGWS FATIDLSRNM LEGDISFLFG KDKTTFEMLL DRNKFEFDFS KLTFGKRLWR LDLNHNKIYG SIPKIIAKNP WQILNVSYNR
301: LCGEIPKGEY MKKFEIYEYL HNKCLCGAPL PPCK

Best Arabidopsis Sequence Match ( AT5G06870.1 )
(BLAST)

001: MDKTMTLFLL LSTLLLTTSL AKDLCHKDDK TTLLKIKKSL NNPYHLASWD PKTDCCSWYC LECGDATVNH RVTSLIIQDG EISGQIPPEV GDLPYLTSLI
101: FRKLTNLTGH IQPTIAKLKN LTFLRLSWTN LTGPVPEFLS QLKNLEYIDL SFNDLSGSIP SSLSSLRKLE YLELSRNKLT GPIPESFGTF SGKVPSLFLS
201: HNQLSGTIPK SLGNPDFYRI DLSRNKLQGD ASILFGAKKT TWIVDISRNM FQFDLSKVKL AKTLNNLDMN HNGITGSIPA EWSKAYFQLL NVSYNRLCGR
301: IPKGEYIQRF DSYSFFHNKC LCGAPLPSCK

Arabidopsis Description

PGIP2PGIP2 [Source:UniProtKB/TrEMBL;Acc:A0A178UDM1]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.