Factsheet for VIT_13s0064g01370.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	mitochondrion
MultiLoc:	extracellular
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_08s0007g07690.t01	Wine grape	extracellular	49.1	47.38
TraesCS3D01G451900.1	Wheat	extracellular	46.69	45.72
TraesCS3A01G459200.1	Wheat	extracellular	46.69	45.59
TraesCS3D01G451800.1	Wheat	extracellular	46.69	45.59
TraesCS3B01G498900.1	Wheat	extracellular	46.08	45.0
TraesCS3D01G451500.1	Wheat	extracellular	44.88	44.61
PGSC0003DMT400021883	Potato	extracellular	44.88	44.61
TraesCS3D01G451400.1	Wheat	extracellular	45.48	44.54
Solyc09g014480.1.1	Tomato	extracellular	44.88	44.48
HORVU3Hr1G098610.1	Barley	extracellular	44.58	44.05
HORVU3Hr1G098730.2	Barley	endoplasmic reticulum, extracellular, mitochondrion	46.69	43.42
EES17529	Sorghum	extracellular	44.58	43.4
Zm00001d035753_P001	Maize	extracellular	44.58	43.4
TraesCS3A01G459300.1	Wheat	cytosol	19.28	43.24
TraesCS3A01G459000.1	Wheat	extracellular	43.98	42.82
EES17528	Sorghum	extracellular	43.37	42.48
TraesCS7D01G200000.1	Wheat	cytosol	39.76	42.17
Os05t0104200-01	Rice	extracellular	39.16	42.07
GSMUA_Achr9P12430_001	Banana	extracellular	37.95	41.72
Solyc09g014590.2.1	Tomato	extracellular	37.95	40.38
TraesCS1D01G010800.1	Wheat	extracellular	40.96	40.36
TraesCS1A01G012600.1	Wheat	extracellular	40.66	40.18
Os05t0104150-01	Rice	extracellular	41.27	40.06
Zm00001d035756_P001	Maize	vacuole	41.87	39.71
TraesCS1B01G017300.1	Wheat	extracellular	40.06	39.47
TraesCS7B01G103900.1	Wheat	extracellular	39.76	39.17
Os05t0104600-01	Rice	extracellular	39.76	38.94
TraesCS2D01G470500.1	Wheat	extracellular, vacuole	40.06	38.78
HORVU2Hr1G106620.1	Barley	extracellular	39.46	38.53
TraesCS2B01G493200.1	Wheat	endoplasmic reticulum, extracellular	39.46	38.3
TraesCS2A01G470600.1	Wheat	extracellular	38.86	38.17
TraesCS2D01G470400.1	Wheat	extracellular	38.25	37.13
TraesCS2A01G470500.1	Wheat	extracellular	37.95	36.84
HORVU1Hr1G002410.1	Barley	endoplasmic reticulum, vacuole	40.36	36.41
EES17527	Sorghum	extracellular, plastid	42.77	36.13
TraesCS2B01G493300.1	Wheat	extracellular	37.05	35.65
Os05t0104700-01	Rice	extracellular	42.47	35.16
TraesCS7A01G197500.1	Wheat	extracellular	19.28	34.97
VIT_13s0064g01260.t01	Wine grape	extracellular	30.72	28.65
VIT_06s0004g01750.t01	Wine grape	extracellular	30.72	28.02
VIT_04s0023g02870.t01	Wine grape	extracellular	33.43	17.26
VIT_01s0026g01200.t01	Wine grape	extracellular, plasma membrane	32.83	17.0
VIT_10s0071g00860.t01	Wine grape	extracellular, vacuole	30.12	16.92
VIT_18s0089g00010.t01	Wine grape	plasma membrane	32.53	11.31

Protein Annotations

EntrezGene:100249468	wikigene:100249468	MapMan:26.8.3.4	Gene3D:3.80.10.10	ProteinID:CCB49483	ProteinID:CCB49483.1
UniProt:F6HB99	EMBL:FN595509	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001611
InterPro:IPR032675	EntrezGene:LOC100249468	wikigene:LOC100249468	InterPro:LRR_N_plant-typ	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt
PFAM:PF08263	PFAM:PF13516	PFAM:PF13855	PANTHER:PTHR44401	PANTHER:PTHR44401:SF1	SUPFAM:SSF52058
SignalP:SignalP-noTM	UniParc:UPI0001984901	ArrayExpress:VIT_13s0064g01370	EnsemblPlantsGene:VIT_13s0064g01370	EnsemblPlants:VIT_13s0064g01370.t01	RefSeq:XP_002263523
RefSeq:XP_002263523.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr13:-:23258084..23259082

Molecular Weight (calculated)

37181.7 Da

IEP (calculated)

8.144

GRAVY (calculated)

-0.031

Length

332 amino acids

Sequence
(BLAST)

001: MRQLLFFIFF LFPGFLSGAE RCHPSDKTAL LKYKNSFANP DQILLSWQPD FDCCDWYGVQ CNETTNRVIG LESSVRLNGT IPSVIADLTY LRTLRLRKNP
101: FLVGEIPPAI GKLTNLVSLD LSWNNISGSV PAFLANLKKL WFLDLSFNKL SGTIPASLST FPEIIGIDLS RNQLTGSIPE SFGHFQGTVP TLVLSHNKLS
201: GEIPASLGDM NFARILISRN NFSGSALMFF KASKTSDTID ISRNNFAFDF SEASFMEQTL VELDISHNKI WGSIPSRITD CVMLQSLNVS YNRLCGKIPS
301: GWKMKYRSEP FDNTSYLHNR CLCSSPLEPC KN

Best Arabidopsis Sequence Match ( AT5G06860.1 )
(BLAST)

001: MDKTATLCLL FLFTFLTTCL SKDLCNQNDK NTLLKIKKSL NNPYHLASWD PQTDCCSWYC LECGDATVNH RVTALTIFSG QISGQIPAEV GDLPYLETLV
101: FRKLSNLTGT IQPTIAKLKN LRMLRLSWTN LTGPIPDFIS QLKNLEFLEL SFNDLSGSIP SSLSTLPKIL ALELSRNKLT GSIPESFGSF PGTVPDLRLS
201: HNQLSGPIPK SLGNIDFNRI DLSRNKLQGD ASMLFGSNKT TWSIDLSRNM FQFDISKVDI PKTLGILDLN HNGITGNIPV QWTEAPLQFF NVSYNKLCGH
301: IPTGGKLQTF DSYSYFHNKC LCGAPLEICK

Arabidopsis Description

PGIP1PGIP1 [Source:UniProtKB/TrEMBL;Acc:A0A178UBN4]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.