Factsheet for VIT_04s0023g02870.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 1
extracellular 7
endoplasmic reticulum 4
vacuole 5
plasma membrane 4
golgi 4
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, peroxisome, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
PTS1:	peroxisome
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400009116	Potato	endoplasmic reticulum, extracellular	63.3	63.3
KRH08128	Soybean	cytosol	59.56	62.48
GSMUA_AchrUn_...	Banana	cytosol	32.04	62.05
VIT_01s0026g01200.t01	Wine grape	extracellular, plasma membrane	38.72	38.85
VIT_10s0071g00860.t01	Wine grape	extracellular, vacuole	32.81	35.7
VIT_13s0064g01370.t01	Wine grape	extracellular	17.26	33.43
VIT_13s0064g01260.t01	Wine grape	extracellular	18.51	33.43
VIT_08s0007g07690.t01	Wine grape	extracellular	17.57	32.85
VIT_06s0004g01750.t01	Wine grape	extracellular	17.73	31.32
VIT_18s0089g00010.t01	Wine grape	plasma membrane	26.13	17.59

Protein Annotations

EntrezGene:100259170	wikigene:100259170	Gene3D:3.80.10.10	MapMan:35.1	ProteinID:CCB44392	ProteinID:CCB44392.1
UniProt:F6GWQ7	EMBL:FN594959	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001611
InterPro:IPR032675	EntrezGene:LOC100259170	wikigene:LOC100259170	InterPro:LRR_N_plant-typ	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt
InterPro:Leu-rich_rpt_typical-subtyp	PFAM:PF08263	PFAM:PF13855	PRINTS:PR00019	PANTHER:PTHR45271	SMART:SM00365
SMART:SM00369	SUPFAM:SSF52058	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI000198333E	ArrayExpress:VIT_04s0023g02870
EnsemblPlantsGene:VIT_04s0023g02870	EnsemblPlants:VIT_04s0023g02870.t01	RefSeq:XP_002267269	RefSeq:XP_002267269.1	SEG:seg	:

Description

No Description!

Coordinates

chr4:+:19448561..19450492

Molecular Weight (calculated)

69129.9 Da

IEP (calculated)

8.874

GRAVY (calculated)

0.073

Length

643 amino acids

Sequence
(BLAST)

001: MKITICSKTL SFLFILFLTA FFSTPISEAC HAIDKAALLD FKHKITSDPS NLLKSWTSTS NCCTTWEGVA CDSSGRVVNV SRPGLIAGDD FITDTSMSGT
101: LSPSLGNVSF LRFLELSNLK ELMGPLPPEL GKLSHLTHLF LDANKLNGSI PTTFRHLVRL QKLYLDSNYL SGVLPSTVIE TLTSLSELGL SGNQFSGSVP
201: SSIGKLVLLT KLDVHGNRIS GSIPPGIGKL KSLKYLDLSE NGITGSLPSS LGGLSELVLL YLNHNQITGS IPSSISGLSS LQFCRLSENG ITGGLPASIG
301: KLSKIQRLIL ENNKLTGKLP TTIGHLTSLT DIFFSNNYFS GKIPSSIGNI QNLQTLDLSK NLLSGEIPRQ IANLRQLQAL DLSFNPLELE SIPTWFAKMN
401: LFKLMLAKTG IAGELPSWLA SSPIGVLDLS SNALTGKLPH WIGNMTNLSF LNLSNNGLHS AVPVEFKNLS LLTDLDLHSN NFTGHLKTIL TKSVQFALGR
501: FNSIDLSSNM FMGPIDQNIG EKPSTASIQS LILSHNPLGG SIPKSLGKLR ELEVVELVGN GLSGTIPVEL SDAKKLQTIK LSQNKLSGGI PYKVLNLDEL
601: QQFNVSQNQL SGRIPPHKAQ FPPSAFMDNP GLCGAPLPPC KHS

Best Arabidopsis Sequence Match ( AT1G35710.1 )
(BLAST)

0001: MGFAEKNLYD FRFLLFISII LSCSISASAT IAEANALLKW KSTFTNSSKL SSWVHDANTN TSFSCTSWYG VSCNSRGSIE ELNLTNTGIE GTFQDFPFIS
0101: LSNLAYVDLS MNLLSGTIPP QFGNLSKLIY FDLSTNHLTG EISPSLGNLK NLTVLYLHQN YLTSVIPSEL GNMESMTDLA LSQNKLTGSI PSSLGNLKNL
0201: MVLYLYENYL TGVIPPELGN MESMTDLALS QNKLTGSIPS TLGNLKNLMV LYLYENYLTG VIPPEIGNME SMTNLALSQN KLTGSIPSSL GNLKNLTLLS
0301: LFQNYLTGGI PPKLGNIESM IDLELSNNKL TGSIPSSLGN LKNLTILYLY ENYLTGVIPP ELGNMESMID LQLNNNKLTG SIPSSFGNLK NLTYLYLYLN
0401: YLTGVIPQEL GNMESMINLD LSQNKLTGSV PDSFGNFTKL ESLYLRVNHL SGAIPPGVAN SSHLTTLILD TNNFTGFFPE TVCKGRKLQN ISLDYNHLEG
0501: PIPKSLRDCK SLIRARFLGN KFTGDIFEAF GIYPDLNFID FSHNKFHGEI SSNWEKSPKL GALIMSNNNI TGAIPTEIWN MTQLVELDLS TNNLFGELPE
0601: AIGNLTNLSR LRLNGNQLSG RVPAGLSFLT NLESLDLSSN NFSSEIPQTF DSFLKLHDMN LSRNKFDGSI PRLSKLTQLT QLDLSHNQLD GEIPSQLSSL
0701: QSLDKLDLSH NNLSGLIPTT FEGMIALTNV DISNNKLEGP LPDTPTFRKA TADALEENIG LCSNIPKQRL KPCRELKKPK KNGNLVVWIL VPILGVLVIL
0801: SICANTFTYC IRKRKLQNGR NTDPETGENM SIFSVDGKFK YQDIIESTNE FDPTHLIGTG GYSKVYRANL QDTIIAVKRL HDTIDEEISK PVVKQEFLNE
0901: VKALTEIRHR NVVKLFGFCS HRRHTFLIYE YMEKGSLNKL LANDEEAKRL TWTKRINVVK GVAHALSYMH HDRITPIVHR DISSGNILLD NDYTAKISDF
1001: GTAKLLKTDS SNWSAVAGTY GYVAPEFAYT MKVTEKCDVY SFGVLILELI IGKHPGDLVS SLSSSPGEAL SLRSISDERV LEPRGQNREK LLKMVEMALL
1101: CLQANPESRP TMLSISTTFS

Arabidopsis Description

Probable leucine-rich repeat receptor-like protein kinase At1g35710 [Source:UniProtKB/Swiss-Prot;Acc:Q9LP24]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.