Factsheet for VIT_06s0004g01750.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
golgi 5
plasma membrane 5
endoplasmic reticulum 5
vacuole 5
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH23157	Soybean	nucleus	75.55	74.73
Bra035741.1-P	Field mustard	extracellular	72.53	72.33
CDY19601	Canola	extracellular	72.53	72.33
CDY06385	Canola	extracellular	71.7	71.51
AT3G20820.1	Thale cress	extracellular	71.15	70.96
PGSC0003DMT400003166	Potato	extracellular, vacuole	70.33	70.33
CDY27559	Canola	extracellular	70.33	70.14
Solyc11g056680.1.1	Tomato	extracellular	70.05	70.05
CDY60388	Canola	extracellular	70.05	69.86
VIT_13s0064g01260.t01	Wine grape	extracellular	66.21	67.7
GSMUA_Achr10P...	Banana	cytosol	51.1	67.64
GSMUA_Achr4P01520_001	Banana	cytosol	49.73	65.82
Bra023925.1-P	Field mustard	extracellular	67.86	65.69
AT5G12940.1	Thale cress	extracellular	65.11	63.88
Bra008869.1-P	Field mustard	extracellular, plasma membrane	64.01	62.3
CDY69775	Canola	extracellular, plasma membrane	64.29	62.07
CDY68308	Canola	extracellular	63.74	62.03
GSMUA_Achr3P03820_001	Banana	endoplasmic reticulum, extracellular	62.91	61.56
KRH24680	Soybean	extracellular	61.54	61.37
CDX91155	Canola	extracellular	57.42	60.4
CDX85681	Canola	extracellular	56.87	60.0
Bra023383.1-P	Field mustard	extracellular	57.14	59.94
CDY69275	Canola	extracellular	61.54	59.89
Bra008870.1-P	Field mustard	extracellular	61.26	59.79
CDY53975	Canola	extracellular	60.44	58.98
KRH24681	Soybean	extracellular	55.77	57.18
KRH29680	Soybean	endoplasmic reticulum	60.71	57.11
Os08t0505900-01	Rice	extracellular	57.97	55.53
TraesCS7B01G146800.1	Wheat	extracellular	56.87	54.47
TraesCS7A01G244600.1	Wheat	endoplasmic reticulum, extracellular, vacuole	56.59	54.21
TraesCS7D01G243300.1	Wheat	extracellular	56.59	54.21
HORVU7Hr1G050110.1	Barley	vacuole	56.59	53.09
HORVU7Hr1G050140.1	Barley	plastid	56.59	52.82
Zm00001d031434_P001	Maize	extracellular	54.67	52.23
EES14271	Sorghum	cytosol	55.77	50.62
VIT_08s0007g07690.t01	Wine grape	extracellular	29.67	31.4
VIT_13s0064g01370.t01	Wine grape	extracellular	28.02	30.72
VIT_10s0071g00860.t01	Wine grape	extracellular, vacuole	35.44	21.83
VIT_01s0026g01200.t01	Wine grape	extracellular, plasma membrane	36.26	20.59
VIT_04s0023g02870.t01	Wine grape	extracellular	31.32	17.73
VIT_18s0089g00010.t01	Wine grape	plasma membrane	34.62	13.19

Protein Annotations

EntrezGene:100241571	wikigene:100241571	Gene3D:3.80.10.10	MapMan:35.1	ProteinID:CCB43731	ProteinID:CCB43731.1
UniProt:F6GU89	EMBL:FN594951	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001611
InterPro:IPR032675	EntrezGene:LOC100241571	wikigene:LOC100241571	InterPro:LRR_N_plant-typ	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt
PFAM:PF08263	PFAM:PF13855	PFscan:PS51257	PANTHER:PTHR44401	PANTHER:PTHR44401:SF2	SUPFAM:SSF52058
SignalP:SignalP-noTM	TIGR:TC54521	TIGR:TC55088	TIGR:TC68600	UniParc:UPI00015C76FB	ArrayExpress:VIT_06s0004g01750
EnsemblPlantsGene:VIT_06s0004g01750	EnsemblPlants:VIT_06s0004g01750.t01	unigene:Vvi.5192	RefSeq:XP_002285553	RefSeq:XP_002285553.1	SEG:seg

Description

No Description!

Coordinates

chr6:+:2147920..2149267

Molecular Weight (calculated)

39273.6 Da

IEP (calculated)

8.260

GRAVY (calculated)

0.137

Length

364 amino acids

Sequence
(BLAST)

001: MALKLFIIAT VVLAGAVTVA SCPPTDREAL LAFRSALHEP YLGIFNSWSG YDCCHNWYGV SCDPETRRVA DINLRGESED PIFERAGRTG YMTGTISPAI
101: CKLRRLSSII IADWKGISGE IPTCITSLPF LRILDLIGNK LSGPIPAGIG RLQRLTVLNV ADNLISATIP SSLTRISTLT HLDLRNNRIS GELPRDFGRL
201: GMLSRALLSR NQFSGTIPSS ISNIYRLADL DLSLNRFSGQ IPASLGKMAV LSTLNLDGNL ISGQIPITLI NSAVSILNLS RNALDGEIPD AFGQGSYFTS
301: LDLSYNKLRG PIPKSMAGAA YIGHLDLSHN HLCGRIPGGS PFDHLEASSF VYNDCLCGKP LRAC

Best Arabidopsis Sequence Match ( AT3G20820.1 )
(BLAST)

001: MNLNVVVLLL LLLISSATCC PPSDRRALLA FRSALHEPYL GIFNSWTGQD CCHNWYGISC DSLTHRVADI NLRGESEDPI FERAHRTGYM TGHISASICE
101: LTRLSAITIA DWKGISGEIP KCITRLPFLR TLDLIGNQIS GGIPYDIGRL NRLAVLNVAD NRISGSIPKS LTNLSSLMHL DLRNNLISGV IPSDVGRLKM
201: LSRALLSGNR ITGRIPESLT NIYRLADVDL SGNQLYGTIP PSLGRMSVLA TLNLDGNKIS GEIPQTLMTS SVMNLNLSRN LLQGKIPEGF GPRSYFTVLD
301: LSYNNLKGPI PRSISGASFI GHLDLSHNHL CGRIPVGSPF DHLEAASFMF NDCLCGKPLR ACLKN

Arabidopsis Description

Leucine-rich repeat (LRR) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LT39]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.