Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 5
- golgi 5
- extracellular 7
- vacuole 4
- plasma membrane 4
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY19601 | Canola | extracellular | 93.15 | 93.15 |
| CDY06385 | Canola | extracellular | 93.15 | 93.15 |
| Bra035741.1-P | Field mustard | extracellular | 93.15 | 93.15 |
| CDY60388 | Canola | extracellular | 92.33 | 92.33 |
| CDY27559 | Canola | extracellular | 92.33 | 92.33 |
| Bra023925.1-P | Field mustard | extracellular | 88.49 | 85.9 |
| KRH23157 | Soybean | nucleus | 72.6 | 72.01 |
| VIT_06s0004g01750.t01 | Wine grape | extracellular | 70.96 | 71.15 |
| Solyc11g056680.1.1 | Tomato | extracellular | 67.67 | 67.86 |
| PGSC0003DMT400003166 | Potato | extracellular, vacuole | 67.12 | 67.31 |
| AT5G12940.1 | Thale cress | extracellular | 66.58 | 65.5 |
| GSMUA_Achr10P... | Banana | cytosol | 46.58 | 61.82 |
| GSMUA_Achr4P01520_001 | Banana | cytosol | 46.3 | 61.45 |
| KRH24680 | Soybean | extracellular | 59.18 | 59.18 |
| GSMUA_Achr3P03820_001 | Banana | endoplasmic reticulum, extracellular | 58.63 | 57.53 |
| KRH29680 | Soybean | endoplasmic reticulum | 59.73 | 56.33 |
| KRH24681 | Soybean | extracellular | 54.52 | 56.06 |
| AT3G12610.1 | Thale cress | extracellular | 56.99 | 55.91 |
| Os08t0505900-01 | Rice | extracellular | 56.44 | 54.21 |
| TraesCS7B01G146800.1 | Wheat | extracellular | 53.15 | 51.05 |
| TraesCS7A01G244600.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 52.88 | 50.79 |
| TraesCS7D01G243300.1 | Wheat | extracellular | 52.88 | 50.79 |
| HORVU7Hr1G050110.1 | Barley | vacuole | 53.42 | 50.26 |
| Zm00001d031434_P001 | Maize | extracellular | 52.33 | 50.13 |
| HORVU7Hr1G050140.1 | Barley | plastid | 53.42 | 50.0 |
| EES14271 | Sorghum | cytosol | 54.25 | 49.38 |
| AT3G12145.1 | Thale cress | extracellular | 28.49 | 32.0 |
| AT5G06860.1 | Thale cress | extracellular | 27.95 | 30.91 |
| AT5G06870.1 | Thale cress | extracellular | 27.67 | 30.61 |
| AT1G33600.1 | Thale cress | extracellular | 33.97 | 25.94 |
| AT2G26380.1 | Thale cress | endoplasmic reticulum, extracellular | 33.15 | 25.21 |
| AT1G33612.1 | Thale cress | extracellular | 31.23 | 25.05 |
| AT1G33610.1 | Thale cress | extracellular, plasma membrane, vacuole | 31.78 | 24.27 |
| AT5G23400.1 | Thale cress | vacuole | 37.81 | 23.43 |
| AT1G33670.1 | Thale cress | extracellular | 28.22 | 22.64 |
| AT1G33590.2 | Thale cress | plastid | 31.23 | 22.18 |
Protein Annotations
| Gene3D:3.80.10.10 | MapMan:35.1 | EntrezGene:821630 | UniProt:A0A178VBP7 | ProteinID:AEE76428.1 | ArrayExpress:AT3G20820 |
| EnsemblPlantsGene:AT3G20820 | RefSeq:AT3G20820 | TAIR:AT3G20820 | RefSeq:AT3G20820-TAIR-G | EnsemblPlants:AT3G20820.1 | TAIR:AT3G20820.1 |
| EMBL:AY063922 | EMBL:AY117334 | ProteinID:BAB02490.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005576 | GO:GO:0005618 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0009506 | GO:GO:0009507 | GO:GO:0009536 | GO:GO:0016020 | GO:GO:0030312 | GO:GO:0048046 |
| InterPro:IPR001611 | InterPro:IPR032675 | InterPro:LRR_N_plant-typ | InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt | RefSeq:NP_188718.1 |
| ProteinID:OAP03118.1 | PFAM:PF08263 | PFAM:PF13855 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009001 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR44401 | PANTHER:PTHR44401:SF2 |
| UniProt:Q9LT39 | SUPFAM:SSF52058 | SignalP:SignalP-noTM | UniParc:UPI00000A0271 | SEG:seg | : |
Description
Leucine-rich repeat (LRR) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LT39]
Coordinates
chr3:+:7280792..7282377
Molecular Weight (calculated)
39864.5 Da
IEP (calculated)
8.489
GRAVY (calculated)
0.065
Length
365 amino acids
Sequence
(BLAST)
(BLAST)
001: MNLNVVVLLL LLLISSATCC PPSDRRALLA FRSALHEPYL GIFNSWTGQD CCHNWYGISC DSLTHRVADI NLRGESEDPI FERAHRTGYM TGHISASICE
101: LTRLSAITIA DWKGISGEIP KCITRLPFLR TLDLIGNQIS GGIPYDIGRL NRLAVLNVAD NRISGSIPKS LTNLSSLMHL DLRNNLISGV IPSDVGRLKM
201: LSRALLSGNR ITGRIPESLT NIYRLADVDL SGNQLYGTIP PSLGRMSVLA TLNLDGNKIS GEIPQTLMTS SVMNLNLSRN LLQGKIPEGF GPRSYFTVLD
301: LSYNNLKGPI PRSISGASFI GHLDLSHNHL CGRIPVGSPF DHLEAASFMF NDCLCGKPLR ACLKN
101: LTRLSAITIA DWKGISGEIP KCITRLPFLR TLDLIGNQIS GGIPYDIGRL NRLAVLNVAD NRISGSIPKS LTNLSSLMHL DLRNNLISGV IPSDVGRLKM
201: LSRALLSGNR ITGRIPESLT NIYRLADVDL SGNQLYGTIP PSLGRMSVLA TLNLDGNKIS GEIPQTLMTS SVMNLNLSRN LLQGKIPEGF GPRSYFTVLD
301: LSYNNLKGPI PRSISGASFI GHLDLSHNHL CGRIPVGSPF DHLEAASFMF NDCLCGKPLR ACLKN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.