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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:
  • nucleus 1
  • extracellular 5
  • endoplasmic reticulum 5
  • vacuole 4
  • plasma membrane 4
  • golgi 4
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, extracellular
Any Predictor:nucleus, plastid, secretory
BaCelLo:nucleus
iPSORT:secretory
MultiLoc:endoplasmic reticulum
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plastid
YLoc:extracellular
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
AT1G33600.1 Thale cress extracellular 68.54 68.83
AT1G33590.2 Thale cress plastid 73.33 68.48
AT1G33612.1 Thale cress extracellular 63.54 67.03
AT1G33610.1 Thale cress extracellular, plasma membrane, vacuole 64.58 64.85
AT1G33670.1 Thale cress extracellular 61.04 64.4
PGSC0003DMT400043544 Potato extracellular 57.5 57.74
KRH56366 Soybean nucleus 57.08 56.03
Solyc10g052880.1.1 Tomato extracellular 55.42 55.65
AT5G12940.1 Thale cress extracellular 27.5 35.58
AT3G12145.1 Thale cress extracellular 23.33 34.46
AT3G20820.1 Thale cress extracellular 25.21 33.15
AT5G06860.1 Thale cress extracellular 22.29 32.42
AT3G12610.1 Thale cress extracellular 24.58 31.72
AT5G06870.1 Thale cress extracellular 21.67 31.52
VIT_18s0089g00010.t01 Wine grape plasma membrane 58.54 29.42
AT5G23400.1 Thale cress vacuole 35.62 29.03
Protein Annotations
Gene3D:3.80.10.10MapMan:35.1EntrezGene:817178ProteinID:AAC14512.1ProteinID:AEC07831.1ArrayExpress:AT2G26380
EnsemblPlantsGene:AT2G26380RefSeq:AT2G26380TAIR:AT2G26380RefSeq:AT2G26380-TAIR-GEnsemblPlants:AT2G26380.1TAIR:AT2G26380.1
GO:GO:0003674GO:GO:0005488GO:GO:0005515InterPro:IPR001611InterPro:IPR032675InterPro:LRR_N_plant-typ
InterPro:LRR_dom_sfInterPro:Leu-rich_rptRefSeq:NP_180206.1UniProt:O48705PFAM:PF00560PFAM:PF08263
PO:PO:0009005PO:PO:0020100PANTHER:PTHR45271SUPFAM:SSF52058SignalP:SignalP-noTMUniParc:UPI00000A94E2
SEG:seg:::::
Description
Leucine-rich repeat (LRR) family protein [Source:UniProtKB/TrEMBL;Acc:O48705]
Coordinates
chr2:-:11226488..11228123
Molecular Weight (calculated)
52432.0 Da
IEP (calculated)
10.019
GRAVY (calculated)
0.080
Length
480 amino acids
Sequence
(BLAST)
001: MNSCSFHNFF IFTAVIFLRC LNPTAAATCH PDDEAGLLAF KSGITKDPSG ILSTWKKGTD CCSWNGVSCP NGNRVVVLTI RIESDDAGIF LSGTISPSLA
101: KLQHLEGVVF INLKNITGPF PPFLFRLPHL KYVYLENTRL SGPLPANIGA LNRLDTLTVK GNRFIGSIPS SISNLTRLNY LNLGGNLLTG TIPLGIANLK
201: LISNLNLDGN RLSGTIPDIF KSMTNLRILT LSRNRFSGKL PPSIASLAPV LAFLELGQNN LSGSIPSYLS RFVALDTLDL SKNRFSGAVP KSLAKLTKIA
301: NINLSHNLLT NPFPVLNVKN YILTLDLSYN KFHMETIPEW VTSASILGSL KLAKCGIKMS LDDWKTRQTD LYVSIDLSDN EISGSPLRFL KGAEQLREFR
401: MSGNKLRFDL RKLSFSTTLE TLDLSRNLVF GKVPARVAGL KTLNLSQNHL CGKLPVTKFP ESVFAGNDCL CGSPLSHCKG
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.