Factsheet for Bra008869.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 5
plasma membrane 6
golgi 5
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY68308	Canola	extracellular	98.66	98.66
Bra008870.1-P	Field mustard	extracellular	86.1	86.33
AT5G12940.1	Thale cress	extracellular	80.48	81.13
Bra023383.1-P	Field mustard	extracellular	74.6	80.4
Bra035741.1-P	Field mustard	extracellular	63.1	64.66
VIT_06s0004g01750.t01	Wine grape	extracellular	62.3	64.01
KRH23157	Soybean	nucleus	61.76	62.77
PGSC0003DMT400003166	Potato	extracellular, vacuole	59.36	60.99
Solyc11g056680.1.1	Tomato	extracellular	59.09	60.71
Bra023925.1-P	Field mustard	extracellular	60.43	60.11
GSMUA_Achr10P...	Banana	cytosol	41.71	56.73
GSMUA_Achr4P01520_001	Banana	cytosol	41.18	56.0
Bra001460.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	55.62	55.91
Bra038737.1-P	Field mustard	endoplasmic reticulum, extracellular	54.55	54.69
KRH24680	Soybean	extracellular	53.21	54.52
GSMUA_Achr3P03820_001	Banana	endoplasmic reticulum, extracellular	51.87	52.15
Os08t0505900-01	Rice	extracellular	52.94	52.11
TraesCS7D01G243300.1	Wheat	extracellular	52.67	51.84
TraesCS7B01G146800.1	Wheat	extracellular	52.41	51.58
TraesCS7A01G244600.1	Wheat	endoplasmic reticulum, extracellular, vacuole	52.41	51.58
KRH29680	Soybean	endoplasmic reticulum	52.14	50.39
HORVU7Hr1G050110.1	Barley	vacuole	51.87	50.0
HORVU7Hr1G050140.1	Barley	plastid	51.87	49.74
Zm00001d031434_P001	Maize	extracellular	50.0	49.08
KRH24681	Soybean	extracellular	45.72	48.17
EES14271	Sorghum	cytosol	51.6	48.13
Bra005918.1-P	Field mustard	extracellular	18.72	34.15
Bra034774.1-P	Field mustard	extracellular	28.61	32.82
Bra009237.1-P	Field mustard	extracellular	28.34	31.55
Bra005919.1-P	Field mustard	extracellular	27.54	31.12
Bra034773.1-P	Field mustard	cytosol	26.2	31.11
Bra009235.1-P	Field mustard	extracellular	27.54	30.84
Bra009234.1-P	Field mustard	extracellular	26.74	30.21
Bra009236.1-P	Field mustard	extracellular	26.74	29.94
Bra005917.1-P	Field mustard	extracellular	27.27	29.82
Bra038700.1-P	Field mustard	extracellular, vacuole	25.67	29.54
Bra009238.1-P	Field mustard	extracellular	25.4	28.61
Bra005916.1-P	Field mustard	extracellular	26.2	28.24
Bra028006.1-P	Field mustard	endoplasmic reticulum, vacuole	32.09	25.05
Bra010209.1-P	Field mustard	extracellular	29.95	23.43
Bra009680.1-P	Field mustard	extracellular, vacuole	36.1	23.0
Bra026499.1-P	Field mustard	plastid	28.61	21.62
Bra016239.1-P	Field mustard	cytosol	12.57	18.22

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	EnsemblPlantsGene:Bra008869	EnsemblPlants:Bra008869.1	EnsemblPlants:Bra008869.1-P	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_N_plant-typ	InterPro:LRR_dom_sf
InterPro:Leu-rich_rpt	UniProt:M4CXC2	PFAM:PF08263	PFAM:PF13855	PFscan:PS51257	PANTHER:PTHR44401
PANTHER:PTHR44401:SF2	SUPFAM:SSF52058	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI0002543B5D	SEG:seg

Description

AT5G12940 (E=1e-164) | leucine-rich repeat family protein

Coordinates

chrA10:-:14208519..14209643

Molecular Weight (calculated)

39942.5 Da

IEP (calculated)

10.073

GRAVY (calculated)

0.222

Length

374 amino acids

Sequence
(BLAST)

001: MVDAKKALVI VLISVVVLLL AGSPTVVQAC LPSDRAALLE FRSKLNEPYI GVFNTWKGQD CCKGWYGVSC DPKSRRVSGI TLRGVSEEPI FQRAKRKGFM
101: TGTISPAICK LTHLSGIIIA DWEGISGVIP SCVTNLLAMR HLDLVGNKIS GVIPASIGKL MKLRVLNLAD NKLSGGIPPS ITRLTMLAHL DLMNNNLYGV
201: IPGDIGRLKM LSRVLLTGNK LSGQIPESLT RIYRLADLEL GMNRITGPIP ASMGKMSVLA TLNLDGNLIS GAIPGTLMNS SISNLNLSGN LLAGKIPNTF
301: GPRSYFTVLD LSNNRLQGAI PGSITTASFI GHLDVSHNHL CGKIPTGSPF DHLEATSFAY NSCLCGKPLG KCRK

Best Arabidopsis Sequence Match ( AT5G12940.1 )
(BLAST)

001: MDTKKSLVIL LTNVVVFLLL STTVHSCLPS DRAALLEFRA KLNEPYIGVF NTWKGLDCCK GWYGVSCDPN TRRVAGITLR GESEDPLFQK AKRSGLMTGS
101: ISPSICKLTR LSGIIIADWK GISGVIPSCI ENLPFLRHLD LVGNKFSGVI PANIGKLLRL KVLNLADNHL YGVIPPSITR LVSLSHLDLR NNNISGVIPR
201: DIGRLKMVSR VLLSGNKISG QIPDSLTRIY RLADLELSMN RLTGPIPASF GKMSVLATLN LDGNLISGMI PGSLLASSIS NLNLSGNLIT GSIPNTFGPR
301: SYFTVLDLAN NRLQGPIPAS ITAASFIGHL DVSHNHLCGK IPMGSPFDHL DATSFAYNAC LCGKPLGNCK K

Arabidopsis Description

Leucine-rich repeat (LRR) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LXU5]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.