Factsheet for Bra016239.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
extracellular 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, extracellular, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	extracellular
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY38783	Canola	extracellular	98.45	61.95
CDY11623	Canola	extracellular	94.19	58.13
Bra028006.1-P	Field mustard	endoplasmic reticulum, vacuole	63.57	34.24
Bra010209.1-P	Field mustard	extracellular	61.63	33.26
AT1G33670.1	Thale cress	extracellular	58.53	33.19
PGSC0003DMT400043544	Potato	extracellular	55.43	29.92
Solyc10g052880.1.1	Tomato	extracellular	54.65	29.5
KRH56366	Soybean	nucleus	55.04	29.04
Bra005918.1-P	Field mustard	extracellular	17.44	21.95
Bra026499.1-P	Field mustard	plastid	36.05	18.79
Bra034774.1-P	Field mustard	extracellular	19.38	15.34
Bra034773.1-P	Field mustard	cytosol	18.6	15.24
Bra038700.1-P	Field mustard	extracellular, vacuole	18.99	15.08
Bra009680.1-P	Field mustard	extracellular, vacuole	33.72	14.82
VIT_18s0089g00010.t01	Wine grape	plasma membrane	54.26	14.66
Bra023383.1-P	Field mustard	extracellular	19.38	14.41
Bra035741.1-P	Field mustard	extracellular	20.16	14.25
Bra038737.1-P	Field mustard	endoplasmic reticulum, extracellular	20.54	14.21
Bra009238.1-P	Field mustard	extracellular	18.22	14.16
Bra001460.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	20.16	13.98
Bra005917.1-P	Field mustard	extracellular	18.22	13.74
Bra008870.1-P	Field mustard	extracellular	19.77	13.67
Bra005919.1-P	Field mustard	extracellular	17.05	13.29
Bra009237.1-P	Field mustard	extracellular	17.05	13.1
Bra009236.1-P	Field mustard	extracellular	16.67	12.87
Bra009235.1-P	Field mustard	extracellular	16.67	12.87
Bra009234.1-P	Field mustard	extracellular	16.28	12.69
Bra005916.1-P	Field mustard	extracellular	17.05	12.68
Bra008869.1-P	Field mustard	extracellular, plasma membrane	18.22	12.57
Bra023925.1-P	Field mustard	extracellular	17.44	11.97

Protein Annotations

EnsemblPlants:Bra016239.1	EnsemblPlants:Bra016239.1-P	EnsemblPlantsGene:Bra016239	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	PANTHER:PTHR45271
PFAM:PF13855	SEG:seg	SUPFAM:SSF52058	UniParc:UPI0002541923	UniProt:M4DIB2	MapMan:35.1

Description

AT1G33610 (E=4e-091) | protein binding

Coordinates

chrA07:-:18690651..18691427

Molecular Weight (calculated)

28625.9 Da

IEP (calculated)

9.970

GRAVY (calculated)

-0.036

Length

258 amino acids

Sequence
(BLAST)

001: MKDLALIDLS RNGFYGKLPP SMESLAHTLT SLYLSQNNLS GTIPDYFSEF KALATFDLSR NRFTGVVPMS FAKLKSLFHL KLSHNFLTGP LPALNPVNGI
101: ASLDLSYNRF HLKTIPQWVT SSPSMYDLKL VKCGIEMNIE EWEPVRTGLF YIVDLSKNDI SGSPARFLNR ADVLQEFRAS GNKLRFDLGK LNFTKSLRIL
201: DLSRNLVYGK VPASVAGLRK LSLSQNNLCG RLPVTKFPAS VFAGNDCLCG SPLPPCKT

Best Arabidopsis Sequence Match ( AT1G33600.2 )
(BLAST)

001: MNSCCFPLFI FAFVIFLRCL SPIEAATCHP DDEAGLLAFK SGITQDPTGI LSSWKKGTDC CSWKGVGCLT NRVTGLTING QSDVTGSFLS GTISPSLAKL
101: QHLVGIYFTN LRNITGSFPQ FLFQLPNVKQ VYFTNSRLSG PLPANIGALS ELGELSLDGN LFTGPIPSSI SNLTRLYLLN LGDNLLTGTI PLGLANLKIL
201: LSLNFGNNRL SETIPDIFKS MQKLQSLTLS RNKFSGNLPP SIASLKPILN YLDLSQNNLS GTIPTFLSNF KVLDSLDLSR NRFSGVVPKS LANMPKLFHL
301: NLSHNFLTGP LPAMKNVDGL ATLDLSYNQF HLKTIPKWVT SSPSMYSLKL VKCGINMSLD NWKPVRPNIY FYIDLSENEI SGSLTWFFNL AHNLYEFQAS
401: GNKLRFDMGK LNLSERLESL DLSRNLIFGK VPMTVAKLQK LNLSHNHLCG KLPVTKFPAS AFVGNDCLCG SPLSPCKI

Arabidopsis Description

Leucine-rich repeat (LRR) family protein [Source:UniProtKB/TrEMBL;Acc:Q9FW48]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.