Factsheet for Bra009238.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 6
vacuole 5
plasma membrane 5
golgi 5
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX70056	Canola	extracellular	100.0	81.98
Bra005918.1-P	Field mustard	extracellular	47.29	76.59
Bra005919.1-P	Field mustard	extracellular	75.9	76.13
Bra005916.1-P	Field mustard	extracellular	78.31	74.93
AT5G06870.1	Thale cress	extracellular	74.1	74.55
Bra005917.1-P	Field mustard	extracellular	75.0	72.81
Bra009234.1-P	Field mustard	extracellular	71.99	72.21
Bra009235.1-P	Field mustard	extracellular	70.48	70.06
Bra009236.1-P	Field mustard	extracellular	69.58	69.16
Bra009237.1-P	Field mustard	extracellular	68.98	68.15
KRH12977	Soybean	nucleus	57.83	56.64
PGSC0003DMT400057136	Potato	extracellular	55.12	55.79
Solyc07g065090.1.1	Tomato	extracellular	54.82	55.66
VIT_08s0007g07690.t01	Wine grape	extracellular	56.93	54.94
KRG95348	Soybean	mitochondrion	55.42	52.42
Bra038700.1-P	Field mustard	extracellular, vacuole	51.2	52.31
TraesCS3A01G459300.1	Wheat	cytosol	22.59	50.68
Bra034774.1-P	Field mustard	extracellular	48.19	49.08
Bra034773.1-P	Field mustard	cytosol	46.08	48.57
KRH12976	Soybean	cytosol	54.22	48.39
GSMUA_Achr9P12430_001	Banana	extracellular	43.37	47.68
TraesCS3A01G459200.1	Wheat	extracellular	46.08	45.0
TraesCS3D01G451800.1	Wheat	extracellular	45.78	44.71
TraesCS3D01G451400.1	Wheat	extracellular	45.18	44.25
TraesCS3B01G498900.1	Wheat	extracellular	44.88	43.82
TraesCS3D01G451500.1	Wheat	extracellular	43.67	43.41
Zm00001d035753_P001	Maize	extracellular	44.58	43.4
TraesCS3D01G451900.1	Wheat	extracellular	44.28	43.36
HORVU3Hr1G098610.1	Barley	extracellular	43.67	43.15
EES17528	Sorghum	extracellular	43.67	42.77
HORVU3Hr1G098730.2	Barley	endoplasmic reticulum, extracellular, mitochondrion	45.78	42.58
TraesCS3A01G459000.1	Wheat	extracellular	43.67	42.52
Os05t0104200-01	Rice	extracellular	39.46	42.39
EES17529	Sorghum	extracellular	43.07	41.94
TraesCS7D01G200000.1	Wheat	cytosol	39.46	41.85
Os05t0104150-01	Rice	extracellular	42.17	40.94
TraesCS1A01G012600.1	Wheat	extracellular	41.27	40.77
TraesCS1D01G010800.1	Wheat	extracellular	41.27	40.65
Os05t0104600-01	Rice	extracellular	40.96	40.12
TraesCS1B01G017300.1	Wheat	extracellular	40.06	39.47
Zm00001d035756_P001	Maize	vacuole	40.96	38.86
TraesCS7B01G103900.1	Wheat	extracellular	39.16	38.58
TraesCS2D01G470400.1	Wheat	extracellular	38.86	37.72
TraesCS2A01G470500.1	Wheat	extracellular	38.55	37.43
TraesCS2B01G493300.1	Wheat	extracellular	38.25	36.81
TraesCS2D01G470500.1	Wheat	extracellular, vacuole	37.95	36.73
HORVU1Hr1G002410.1	Barley	endoplasmic reticulum, vacuole	40.66	36.68
HORVU2Hr1G106620.1	Barley	extracellular	37.35	36.47
TraesCS2B01G493200.1	Wheat	endoplasmic reticulum, extracellular	37.05	35.96
TraesCS2A01G470600.1	Wheat	extracellular	35.54	34.91
EES17527	Sorghum	extracellular, plastid	40.96	34.61
Os05t0104700-01	Rice	extracellular	41.27	34.16
Bra035741.1-P	Field mustard	extracellular	30.42	27.67
Bra001460.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	30.72	27.42
Bra038737.1-P	Field mustard	endoplasmic reticulum, extracellular	30.12	26.81
Bra023383.1-P	Field mustard	extracellular	27.71	26.51
TraesCS7A01G197500.1	Wheat	extracellular	14.46	26.23
Bra023925.1-P	Field mustard	extracellular	29.22	25.8
Bra008869.1-P	Field mustard	extracellular, plasma membrane	28.61	25.4
Bra008870.1-P	Field mustard	extracellular	27.71	24.66
Bra028006.1-P	Field mustard	endoplasmic reticulum, vacuole	31.33	21.71
Bra010209.1-P	Field mustard	extracellular	30.12	20.92
Bra009680.1-P	Field mustard	extracellular, vacuole	32.53	18.4
Bra016239.1-P	Field mustard	cytosol	14.16	18.22
Bra026499.1-P	Field mustard	plastid	25.0	16.77

Protein Annotations

MapMan:26.8.3.4	Gene3D:3.80.10.10	ProteinID:AAX68500	ProteinID:AAX68500.1	EMBL:AY964100	EnsemblPlantsGene:Bra009238
EnsemblPlants:Bra009238.1	EnsemblPlants:Bra009238.1-P	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001611
InterPro:IPR032675	InterPro:LRR_N_plant-typ	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	PFAM:PF08263	PFAM:PF13855
PRINTS:PR00019	PFscan:PS51450	PANTHER:PTHR44138	UniProt:Q56D26	SUPFAM:SSF52058	SignalP:SignalP-noTM
UniParc:UPI00004F991D	SEG:seg	:	:	:	:

Description

AT5G06860 (E=4e-133) PGIP1, ATPGIP1 | PGIP1 (POLYGALACTURONASE INHIBITING PROTEIN 1); protein binding

Coordinates

chrA10:+:15772980..15774070

Molecular Weight (calculated)

37491.5 Da

IEP (calculated)

9.538

GRAVY (calculated)

-0.193

Length

332 amino acids

Sequence
(BLAST)

001: MSKATTLLLF LFFTLLLTTS LSKDLCHKDD KNTLLKIKKS LSNPYNNIIS WDPKEDCCTW FNVECGDATV NHRVTSLHIS YDQISAQIPP EVGDLPYLQT
101: LIFRKLSNLT GPIQPTIAKL KYLRFLRLSW TNLTGPIPDF FSQLKNLQYI DLSYNDLSGS IPTSLALLPK LEYLELSRNK LTGPIPELFR SFPGKAPDLF
201: LSHNQLNGSI PKSLGKLDFY RIDLSHNKLK GDASMLFGTN KKTWTIDLSR NMFQFDISKV KVAKTVNLLD LNHNGITGSI PVQWTELSLQ SFNVSYNRLC
301: GPIPKGGQLQ RDGAYAYLHN KCLCGAPLQR CK

Best Arabidopsis Sequence Match ( AT5G06860.1 )
(BLAST)

001: MDKTATLCLL FLFTFLTTCL SKDLCNQNDK NTLLKIKKSL NNPYHLASWD PQTDCCSWYC LECGDATVNH RVTALTIFSG QISGQIPAEV GDLPYLETLV
101: FRKLSNLTGT IQPTIAKLKN LRMLRLSWTN LTGPIPDFIS QLKNLEFLEL SFNDLSGSIP SSLSTLPKIL ALELSRNKLT GSIPESFGSF PGTVPDLRLS
201: HNQLSGPIPK SLGNIDFNRI DLSRNKLQGD ASMLFGSNKT TWSIDLSRNM FQFDISKVDI PKTLGILDLN HNGITGNIPV QWTEAPLQFF NVSYNKLCGH
301: IPTGGKLQTF DSYSYFHNKC LCGAPLEICK

Arabidopsis Description

PGIP1PGIP1 [Source:UniProtKB/TrEMBL;Acc:A0A178UBN4]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.