Factsheet for VIT_08s0007g07690.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 5
nucleus 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT5G06860.1	Thale cress	extracellular	60.17	62.73
Solyc07g065090.1.1	Tomato	extracellular	59.3	62.39
CDX70060	Canola	extracellular	60.17	62.35
Bra009234.1-P	Field mustard	extracellular	59.88	62.24
PGSC0003DMT400057136	Potato	extracellular	59.01	61.89
CDX98965	Canola	extracellular	59.59	61.75
CDX70058	Canola	extracellular	59.3	61.08
KRG95348	Soybean	mitochondrion	61.63	60.4
AT5G06870.1	Thale cress	extracellular	57.85	60.3
Bra009236.1-P	Field mustard	extracellular	58.14	59.88
CDX70059	Canola	extracellular	57.56	59.28
Bra009235.1-P	Field mustard	extracellular	57.27	58.98
CDY58884	Canola	extracellular	56.69	58.91
CDY58887	Canola	extracellular	56.4	58.79
CDX98966	Canola	extracellular	56.69	58.38
CDX70057	Canola	extracellular	56.69	58.04
Bra009237.1-P	Field mustard	extracellular	56.69	58.04
CDX98967	Canola	extracellular	56.69	58.04
Bra005919.1-P	Field mustard	extracellular	55.81	58.01
Bra005918.1-P	Field mustard	extracellular	34.3	57.56
Bra009238.1-P	Field mustard	extracellular	54.94	56.93
CDY58888	Canola	extracellular	55.52	55.85
Bra005917.1-P	Field mustard	extracellular	55.52	55.85
CDX81023	Canola	extracellular	54.94	55.26
Bra005916.1-P	Field mustard	extracellular	55.52	55.04
CDY58889	Canola	extracellular	54.36	53.89
KRH12977	Soybean	nucleus	52.62	53.39
KRH12976	Soybean	cytosol	54.36	50.27
CDX98968	Canola	endoplasmic reticulum, extracellular, vacuole	55.23	49.35
VIT_13s0064g01370.t01	Wine grape	extracellular	47.38	49.1
CDX70056	Canola	extracellular	55.23	46.91
CDX81022	Canola	extracellular, plasma membrane	49.71	33.79
VIT_06s0004g01750.t01	Wine grape	extracellular	31.4	29.67
VIT_13s0064g01260.t01	Wine grape	extracellular	29.36	28.37
VIT_10s0071g00860.t01	Wine grape	extracellular, vacuole	31.98	18.61
VIT_04s0023g02870.t01	Wine grape	extracellular	32.85	17.57
VIT_01s0026g01200.t01	Wine grape	extracellular, plasma membrane	31.98	17.16
VIT_18s0089g00010.t01	Wine grape	plasma membrane	31.1	11.2

Protein Annotations

EntrezGene:100232865	wikigene:100232865	MapMan:26.8.3.4	Gene3D:3.80.10.10	ProteinID:AAK14075	ProteinID:AAK14075.1
ProteinID:AAM74142	ProteinID:AAM74142.1	EMBL:AF305093	EMBL:AF499451	ProteinID:AFQ39769	ProteinID:AFQ39769.1
ProteinID:AFQ39770	ProteinID:AFQ39770.1	ProteinID:CCB55181	ProteinID:CCB55181.1	UniProt:F6HL98	EMBL:FN595991
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005576	GO:GO:0005618
GO:GO:0005623	GO:GO:0006950	GO:GO:0006952	GO:GO:0008150	GO:GO:0016020	GO:GO:0030312
InterPro:IPR001611	InterPro:IPR032675	EMBL:JN797495	EMBL:JN797496	EntrezGene:LOC100232865	wikigene:LOC100232865
InterPro:LRR_N_plant-typ	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	PFAM:PF08263	PFAM:PF13516	PFAM:PF13855
PRINTS:PR00019	PFscan:PS51450	PANTHER:PTHR44138	SUPFAM:SSF52058	SignalP:SignalP-noTM	UniParc:UPI0002109E41
ArrayExpress:VIT_08s0007g07690	EnsemblPlantsGene:VIT_08s0007g07690	EnsemblPlants:VIT_08s0007g07690.t01	SEG:seg	:	:

Description

No Description!

Coordinates

chr8:-:21152228..21153570

Molecular Weight (calculated)

38269.5 Da

IEP (calculated)

8.975

GRAVY (calculated)

-0.096

Length

344 amino acids

Sequence
(BLAST)

001: METSKLFLLS SSLLLVLLAT RPCPSLSERC NPKDKKVLLQ IKKALDNPYI LASWNPNTDC CGWYCVECDL TTHRINSLTI FSGQLSGQIP DAVGDLPFLE
101: TLIFRKLSNL TGQIPPAIAK LKHLKMVRLS WTNLSGPVPA FFSELKNLTY LDLSFNNLSG PIPGSLSLLP NLGALHLDRN HLTGPIPDSF GKFAGSTPGL
201: HLSHNQLSGK IPYSFRGFDP NVMDLSRNKL EGDLSIFFNA NKSTQIVDFS RNLFQFDLSR VEFPKSLTSL DLSHNKIAGS LPEMMTSLDL QFLNVSYNRL
301: CGKIPVGGKL QSFDYDSYFH NRCLCGAPLQ SCKITRNIIN KKEK

Best Arabidopsis Sequence Match ( AT5G06860.1 )
(BLAST)

001: MDKTATLCLL FLFTFLTTCL SKDLCNQNDK NTLLKIKKSL NNPYHLASWD PQTDCCSWYC LECGDATVNH RVTALTIFSG QISGQIPAEV GDLPYLETLV
101: FRKLSNLTGT IQPTIAKLKN LRMLRLSWTN LTGPIPDFIS QLKNLEFLEL SFNDLSGSIP SSLSTLPKIL ALELSRNKLT GSIPESFGSF PGTVPDLRLS
201: HNQLSGPIPK SLGNIDFNRI DLSRNKLQGD ASMLFGSNKT TWSIDLSRNM FQFDISKVDI PKTLGILDLN HNGITGNIPV QWTEAPLQFF NVSYNKLCGH
301: IPTGGKLQTF DSYSYFHNKC LCGAPLEICK

Arabidopsis Description

PGIP1PGIP1 [Source:UniProtKB/TrEMBL;Acc:A0A178UBN4]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.