CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 1
extracellular 6
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX70057	Canola	extracellular	96.43	96.43
CDX70058	Canola	extracellular	89.29	89.82
CDX98966	Canola	extracellular	80.95	81.44
CDX70059	Canola	extracellular	80.65	81.14
CDX98965	Canola	extracellular	77.08	78.01
CDX70060	Canola	extracellular	76.19	77.11
AT5G06860.1	Thale cress	extracellular	75.0	76.36
CDY58884	Canola	extracellular	66.96	67.98
CDY58887	Canola	extracellular	65.77	66.97
CDY58888	Canola	extracellular	65.18	64.04
CDY58889	Canola	extracellular	65.77	63.69
CDX81023	Canola	extracellular	64.58	63.45
CDX98968	Canola	endoplasmic reticulum, extracellular, vacuole	68.45	59.74
PGSC0003DMT400057136	Potato	extracellular	56.25	57.62
Solyc07g065090.1.1	Tomato	extracellular	55.65	57.19
CDX70056	Canola	extracellular	68.45	56.79
VIT_08s0007g07690.t01	Wine grape	extracellular	58.04	56.69
TraesCS3A01G459300.1	Wheat	cytosol	24.7	56.08
KRG95348	Soybean	mitochondrion	57.14	54.7
KRH12977	Soybean	nucleus	52.68	52.21
CDY50569	Canola	extracellular, vacuole	50.3	52.0
CDY52623	Canola	extracellular, vacuole	50.0	51.69
CDY05006	Canola	extracellular	48.51	50.31
CDY42127	Canola	extracellular	48.21	49.69
CDY08451	Canola	endoplasmic reticulum, extracellular	47.92	49.39
CDY14065	Canola	extracellular	46.73	48.46
CDY42130	Canola	extracellular	47.02	48.32
CDY42131	Canola	extracellular	46.13	47.99
TraesCS3A01G459200.1	Wheat	extracellular	48.51	47.94
TraesCS3D01G451800.1	Wheat	extracellular	48.21	47.65
KRH12976	Soybean	cytosol	52.68	47.58
CDY08448	Canola	extracellular	46.13	47.4
GSMUA_Achr9P12430_001	Banana	extracellular	42.26	47.02
TraesCS3B01G498900.1	Wheat	extracellular	47.32	46.76
CDY08450	Canola	extracellular	44.94	46.75
TraesCS3D01G451900.1	Wheat	extracellular	46.73	46.31
CDY42129	Canola	cytosol	44.64	46.3
Zm00001d035753_P001	Maize	extracellular	46.73	46.04
TraesCS3D01G451400.1	Wheat	extracellular	46.43	46.02
EES17528	Sorghum	extracellular	46.13	45.72
HORVU3Hr1G098730.2	Barley	endoplasmic reticulum, extracellular, mitochondrion	48.21	45.38
HORVU3Hr1G098610.1	Barley	extracellular	45.24	45.24
EES17529	Sorghum	extracellular	45.83	45.16
Os05t0104200-01	Rice	extracellular	41.37	44.98
TraesCS3D01G451500.1	Wheat	extracellular	44.64	44.91
TraesCS3A01G459000.1	Wheat	extracellular	45.54	44.87
TraesCS7D01G200000.1	Wheat	cytosol	40.77	43.77
TraesCS1A01G012600.1	Wheat	extracellular	42.86	42.86
Zm00001d035756_P001	Maize	vacuole	44.35	42.57
TraesCS1D01G010800.1	Wheat	extracellular	42.56	42.43
Os05t0104150-01	Rice	extracellular	42.56	41.81
Os05t0104600-01	Rice	extracellular	41.67	41.3
TraesCS7B01G103900.1	Wheat	extracellular	41.37	41.25
TraesCS1B01G017300.1	Wheat	extracellular	41.37	41.25
TraesCS2D01G470400.1	Wheat	extracellular	39.88	39.18
TraesCS2A01G470500.1	Wheat	extracellular	39.88	39.18
CDX81022	Canola	extracellular, plasma membrane	58.93	39.13
TraesCS2B01G493200.1	Wheat	endoplasmic reticulum, extracellular	39.58	38.89
TraesCS2D01G470500.1	Wheat	extracellular, vacuole	39.58	38.78
TraesCS2B01G493300.1	Wheat	extracellular	39.58	38.55
HORVU2Hr1G106620.1	Barley	extracellular	38.99	38.53
HORVU1Hr1G002410.1	Barley	endoplasmic reticulum, vacuole	41.67	38.04
TraesCS2A01G470600.1	Wheat	extracellular	37.8	37.57
EES17527	Sorghum	extracellular, plastid	42.26	36.13
Os05t0104700-01	Rice	extracellular	42.86	35.91
TraesCS7A01G197500.1	Wheat	extracellular	16.96	31.15
CDX85681	Canola	extracellular	30.65	29.86
CDX91155	Canola	extracellular	30.36	29.48
CDY19601	Canola	extracellular	31.85	29.32
CDY60388	Canola	extracellular	31.85	29.32
CDY52664	Canola	extracellular	32.14	28.95
CDY27559	Canola	extracellular	31.25	28.77
CDY06385	Canola	extracellular	31.25	28.77
CDY50534	Canola	extracellular, vacuole	31.55	28.42
CDX73812	Canola	endoplasmic reticulum, extracellular, vacuole	30.65	27.69
CDY00787	Canola	endoplasmic reticulum, extracellular, vacuole	30.65	27.69
CDY69775	Canola	extracellular, plasma membrane	30.95	27.59
CDY68308	Canola	extracellular	30.65	27.54
CDY53975	Canola	extracellular	30.36	27.35
CDY69275	Canola	extracellular	29.76	26.74
CDY15279	Canola	plastid	27.08	21.36
CDY40923	Canola	extracellular, vacuole	29.76	21.32
CDX93759	Canola	endoplasmic reticulum, extracellular, vacuole	10.12	20.86
CDX80361	Canola	extracellular, vacuole	35.12	20.1
CDY38783	Canola	extracellular	24.4	20.0
CDX88024	Canola	extracellular, vacuole	34.82	19.93
CDY11623	Canola	extracellular	24.11	19.38
CDY64876	Canola	extracellular, vacuole	33.33	19.21
CDY16850	Canola	plastid	27.68	18.79
CDX93758	Canola	plastid	13.39	17.51

Protein Annotations

EnsemblPlants:CDX98967	EnsemblPlantsGene:GSBRNA2T00107083001	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_N_plant-typ	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	PANTHER:PTHR44138
PFAM:PF08263	PFAM:PF13855	PFscan:PS51450	ProteinID:CDX98967	ProteinID:CDX98967.1	SEG:seg
SignalP:SignalP-noTM	SUPFAM:SSF52058	TMHMM:TMhelix	UniParc:UPI0004EDC9E0	MapMan:26.8.3.4	:

Description

BnaC09g48680D

Coordinates

chrLK031907:+:843529..844746

Molecular Weight (calculated)

37495.1 Da

IEP (calculated)

7.967

GRAVY (calculated)

-0.043

Length

336 amino acids

Sequence
(BLAST)

001: MDHKTNTTLL FSLLFSITYL ITIATSKDLC NQNDKNTLLK IKKSLNNPYH LASWHPETDC CSWYCLECGD ATVNHRVISL TIFAGQISGQ IPPEVGDLPY
101: LQNLMFHRIT NITGQIPSTI TKLKHLRSLR LSWLNLTGPV PDFLSQLMNL EYLSLAFNQL SGSIPSSLAL LPKLSYIDVS RNKLTGTIPE SFGSFPAEVP
201: YLIFSHNQLS GSIPKSLGNL DFNRIDFSRN KLTGDASMLF GANKTTFSID LSRNMFQFDL SRVVLHESLG VLDLNHNGIT GSIPVQWTEY SLQILNVSYN
301: RLCGPIPTGG SLQRFDSYTY FHNKCLCGAP LDSSCK

Best Arabidopsis Sequence Match ( AT5G06860.1 )
(BLAST)

001: MDKTATLCLL FLFTFLTTCL SKDLCNQNDK NTLLKIKKSL NNPYHLASWD PQTDCCSWYC LECGDATVNH RVTALTIFSG QISGQIPAEV GDLPYLETLV
101: FRKLSNLTGT IQPTIAKLKN LRMLRLSWTN LTGPIPDFIS QLKNLEFLEL SFNDLSGSIP SSLSTLPKIL ALELSRNKLT GSIPESFGSF PGTVPDLRLS
201: HNQLSGPIPK SLGNIDFNRI DLSRNKLQGD ASMLFGSNKT TWSIDLSRNM FQFDISKVDI PKTLGILDLN HNGITGNIPV QWTEAPLQFF NVSYNKLCGH
301: IPTGGKLQTF DSYSYFHNKC LCGAPLEICK

Arabidopsis Description

PGIP1PGIP1 [Source:UniProtKB/TrEMBL;Acc:A0A178UBN4]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.