Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY08450 | Canola | extracellular | 93.52 | 93.81 |
| CDY08448 | Canola | extracellular | 85.8 | 85.02 |
| CDY42130 | Canola | extracellular | 85.49 | 84.71 |
| CDY42131 | Canola | extracellular | 80.25 | 80.5 |
| CDY42127 | Canola | extracellular | 65.74 | 65.34 |
| CDY50569 | Canola | extracellular, vacuole | 64.51 | 64.31 |
| CDY08451 | Canola | endoplasmic reticulum, extracellular | 64.51 | 64.11 |
| CDY52623 | Canola | extracellular, vacuole | 63.89 | 63.69 |
| CDY05006 | Canola | extracellular | 55.86 | 55.86 |
| CDY14065 | Canola | extracellular | 54.63 | 54.63 |
| CDX98965 | Canola | extracellular | 47.84 | 46.69 |
| CDY58884 | Canola | extracellular | 46.91 | 45.92 |
| CDX70060 | Canola | extracellular | 46.6 | 45.48 |
| CDY58887 | Canola | extracellular | 46.3 | 45.45 |
| CDX70059 | Canola | extracellular | 46.6 | 45.21 |
| CDX70058 | Canola | extracellular | 46.6 | 45.21 |
| CDX98966 | Canola | extracellular | 46.3 | 44.91 |
| CDX98967 | Canola | extracellular | 46.3 | 44.64 |
| CDX70057 | Canola | extracellular | 45.99 | 44.35 |
| CDY58888 | Canola | extracellular | 46.3 | 43.86 |
| CDX81023 | Canola | extracellular | 45.68 | 43.27 |
| CDY58889 | Canola | extracellular | 45.06 | 42.07 |
| CDX98968 | Canola | endoplasmic reticulum, extracellular, vacuole | 46.3 | 38.96 |
| CDX70056 | Canola | extracellular | 46.6 | 37.28 |
| CDX85681 | Canola | extracellular | 30.86 | 28.99 |
| CDX91155 | Canola | extracellular | 30.86 | 28.9 |
| CDY60388 | Canola | extracellular | 30.56 | 27.12 |
| CDY00787 | Canola | endoplasmic reticulum, extracellular, vacuole | 30.86 | 26.88 |
| CDX73812 | Canola | endoplasmic reticulum, extracellular, vacuole | 30.86 | 26.88 |
| CDY27559 | Canola | extracellular | 29.63 | 26.3 |
| CDY19601 | Canola | extracellular | 29.32 | 26.03 |
| CDY53975 | Canola | extracellular | 29.94 | 26.01 |
| CDY68308 | Canola | extracellular | 29.94 | 25.94 |
| CDY06385 | Canola | extracellular | 29.01 | 25.75 |
| CDY52664 | Canola | extracellular | 29.63 | 25.74 |
| CDY69775 | Canola | extracellular, plasma membrane | 29.94 | 25.73 |
| CDX81022 | Canola | extracellular, plasma membrane | 40.12 | 25.69 |
| CDY69275 | Canola | extracellular | 29.32 | 25.4 |
| CDY50534 | Canola | extracellular, vacuole | 29.01 | 25.2 |
| CDY38783 | Canola | extracellular | 25.0 | 19.76 |
| CDY11623 | Canola | extracellular | 25.31 | 19.62 |
| CDY40923 | Canola | extracellular, vacuole | 27.78 | 19.19 |
| CDY15279 | Canola | plastid | 25.0 | 19.01 |
| CDX93758 | Canola | plastid | 14.2 | 17.9 |
| CDX93759 | Canola | endoplasmic reticulum, extracellular, vacuole | 8.95 | 17.79 |
| CDY64876 | Canola | extracellular, vacuole | 31.79 | 17.67 |
| CDX88024 | Canola | extracellular, vacuole | 31.48 | 17.38 |
| CDX80361 | Canola | extracellular, vacuole | 31.48 | 17.38 |
| CDY16850 | Canola | plastid | 24.69 | 16.16 |
Protein Annotations
| EnsemblPlants:CDY42129 | EnsemblPlantsGene:GSBRNA2T00074309001 | Gene3D:3.80.10.10 | InterPro:IPR032675 | InterPro:LRR_N_plant-typ | InterPro:LRR_dom_sf |
| PANTHER:PTHR44138 | PFAM:PF08263 | ProteinID:CDY42129 | ProteinID:CDY42129.1 | SUPFAM:SSF52058 | UniParc:UPI0004EDE27D |
| UniProt:A0A078HXR6 | MapMan:26.8.3.4 | : | : | : | : |
Description
BnaC05g40900DBnaC05g40900D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HXR6]
Coordinates
chrLK032516:-:46493..48252
Molecular Weight (calculated)
36681.4 Da
IEP (calculated)
9.909
GRAVY (calculated)
-0.305
Length
324 amino acids
Sequence
(BLAST)
(BLAST)
001: MVDTYRNTLS WSFKKHGQAH NCNSKDKNTL LQIKKHFNNT EFLSSWDPQT DCCTSWTGIE CTNGRVTLFS MANYRTLYGQ IPDQIGDLLE LRTLEMSHMK
101: LTGNIPRTIT KLKHLVFIFL LWNKLSGPIP DYISELKSVT FLDISFNKFT GPIPGWLTQM PKLQTFQADN NSLTGPVPNS FGSFVGSVPN LFLKNNKLSG
201: KIPESLSKMD FQAVVLKGNG FTGDGSMFFG GNKRTVQVDL SRNLFEFDLS KIKFGKSLAM LDLSHNRIFG TLPRELTQLH LERFNISYNR LCGKIPRGGQ
301: LQTFKSYEFA ENRCLCGSPL KKAC
101: LTGNIPRTIT KLKHLVFIFL LWNKLSGPIP DYISELKSVT FLDISFNKFT GPIPGWLTQM PKLQTFQADN NSLTGPVPNS FGSFVGSVPN LFLKNNKLSG
201: KIPESLSKMD FQAVVLKGNG FTGDGSMFFG GNKRTVQVDL SRNLFEFDLS KIKFGKSLAM LDLSHNRIFG TLPRELTQLH LERFNISYNR LCGKIPRGGQ
301: LQTFKSYEFA ENRCLCGSPL KKAC
001: MKLFVHLSIF FSILFITLPS SYSCTENDKN ALLQIKKALG NPPLLSSWNP RTDCCTGWTG VECTNRRVTG LSVTSGEVSG QISYQIGDLV DLRTLDFSYL
101: PHLTGNIPRT ITKLKNLNTL YLKHTSLSGP IPDYISELKS LTFLDLSFNQ FTGPIPGSLS QMPKLEAIQI NDNKLTGSIP NSFGSFVGNV PNLYLSNNKL
201: SGKIPESLSK YDFNAVDLSG NGFEGDAFMF FGRNKTTVRV DLSRNMFNFD LVKVKFARSI VSLDLSQNHI YGKIPPALTK LHLEHFNVSD NHLCGKIPSG
301: GLLQTFEPSA FAHNICLCGT PLKAC
101: PHLTGNIPRT ITKLKNLNTL YLKHTSLSGP IPDYISELKS LTFLDLSFNQ FTGPIPGSLS QMPKLEAIQI NDNKLTGSIP NSFGSFVGNV PNLYLSNNKL
201: SGKIPESLSK YDFNAVDLSG NGFEGDAFMF FGRNKTTVRV DLSRNMFNFD LVKVKFARSI VSLDLSQNHI YGKIPPALTK LHLEHFNVSD NHLCGKIPSG
301: GLLQTFEPSA FAHNICLCGT PLKAC
Arabidopsis Description
FLR1FTM4 [Source:UniProtKB/TrEMBL;Acc:A0A178V9V7]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.