Factsheet for Solyc07g065090.1.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 5
nucleus 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

extracellular: 22364583
nucleus: 28394025
extracellular: 28847647
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 28847647 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA. Electronic address: jabadia@eead.csic.es.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400057136	Potato	extracellular	95.11	94.82
AT5G06860.1	Thale cress	extracellular	61.47	60.91
Bra009234.1-P	Field mustard	extracellular	60.24	59.52
CDX70060	Canola	extracellular	60.24	59.34
VIT_08s0007g07690.t01	Wine grape	extracellular	62.39	59.3
CDX98965	Canola	extracellular	59.94	59.04
CDX98966	Canola	extracellular	59.02	57.78
KRG95348	Soybean	mitochondrion	61.77	57.55
Bra009235.1-P	Field mustard	extracellular	58.72	57.48
CDX70059	Canola	extracellular	58.72	57.48
CDX70058	Canola	extracellular	58.41	57.19
Bra009236.1-P	Field mustard	extracellular	58.1	56.89
CDX70057	Canola	extracellular	57.8	56.25
Bra009237.1-P	Field mustard	extracellular	57.19	55.65
CDX98967	Canola	extracellular	57.19	55.65
AT5G06870.1	Thale cress	extracellular	55.66	55.15
Bra009238.1-P	Field mustard	extracellular	55.66	54.82
CDY58887	Canola	extracellular	55.05	54.55
CDY58884	Canola	extracellular	55.05	54.38
Bra005919.1-P	Field mustard	extracellular	54.74	54.08
Bra005917.1-P	Field mustard	extracellular	55.96	53.51
CDY58888	Canola	extracellular	55.96	53.51
Bra005918.1-P	Field mustard	extracellular	33.33	53.17
Solyc09g014590.2.1	Tomato	extracellular	50.46	52.88
KRH12977	Soybean	nucleus	54.74	52.8
Solyc09g014480.1.1	Tomato	extracellular	53.82	52.54
Bra005916.1-P	Field mustard	extracellular	55.66	52.45
CDX81023	Canola	extracellular	54.74	52.34
CDY58889	Canola	extracellular	55.05	51.87
KRH12976	Soybean	cytosol	58.72	51.61
CDX98968	Canola	endoplasmic reticulum, extracellular, vacuole	56.57	48.05
CDX70056	Canola	extracellular	55.66	44.94
CDX81022	Canola	extracellular, plasma membrane	48.32	31.23
Solyc11g056680.1.1	Tomato	extracellular	33.64	30.22
Solyc01g086920.2.1	Tomato	nucleus	12.84	25.61
Solyc10g052880.1.1	Tomato	extracellular	33.33	22.8
Solyc01g011050.2.1	Tomato	endoplasmic reticulum, extracellular, vacuole	23.85	22.29
Solyc04g008830.1.1	Tomato	nucleus	35.47	19.56
Solyc05g006670.1.1	Tomato	extracellular	30.89	15.88

Protein Annotations

EnsemblPlants:Solyc07g065090.1.1	EnsemblPlantsGene:Solyc07g065090.1	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_N_plant-typ	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	PANTHER:PTHR44138
PFAM:PF00560	PFAM:PF08263	PFAM:PF13855	SignalP:SignalP-noTM	SUPFAM:SSF52058	UniParc:UPI000276CA3C
UniProt:K4CHI8	MapMan:26.8.3.4	:	:	:	:

Description

No Description!

Coordinates

chr7:-:66998756..66999739

Molecular Weight (calculated)

36478.2 Da

IEP (calculated)

8.467

GRAVY (calculated)

-0.045

Length

327 amino acids

Sequence
(BLAST)

001: MNLSLLLVVI FLCFASPSLS VRCNPKDKKV LLQIKKDLGN PYHLASWDPN TDCCYWYVVK CDRKTNRINA LTVFQANISG QIPAAVGDLP YLETLEFHHV
101: TNLTGTIPPA IAKLTNLKML RLSFTNLTGP IPEFLSQLKN LTLLELNYNQ FTGTIPSSLS QLPNLLAMYL DRNKLTGTIP ESFGRFKGPN IPDLYLSHNS
201: LTGHVPASLG DLNFSTLDFS RNKLEGDVSF LFGKNKTSQV IDLSRNLLEF DISKSEFAES LISLDLNHNR IFGSLPPGLK DVPLQFFNVS YNRLCGQIPQ
301: GGTLQSFDIY SYLHNKCLCG SPLPKCK

Best Arabidopsis Sequence Match ( AT5G06860.1 )
(BLAST)

001: MDKTATLCLL FLFTFLTTCL SKDLCNQNDK NTLLKIKKSL NNPYHLASWD PQTDCCSWYC LECGDATVNH RVTALTIFSG QISGQIPAEV GDLPYLETLV
101: FRKLSNLTGT IQPTIAKLKN LRMLRLSWTN LTGPIPDFIS QLKNLEFLEL SFNDLSGSIP SSLSTLPKIL ALELSRNKLT GSIPESFGSF PGTVPDLRLS
201: HNQLSGPIPK SLGNIDFNRI DLSRNKLQGD ASMLFGSNKT TWSIDLSRNM FQFDISKVDI PKTLGILDLN HNGITGNIPV QWTEAPLQFF NVSYNKLCGH
301: IPTGGKLQTF DSYSYFHNKC LCGAPLEICK

Arabidopsis Description

PGIP1PGIP1 [Source:UniProtKB/TrEMBL;Acc:A0A178UBN4]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.