Factsheet for GSMUA_Achr6P22250_001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 6
vacuole 5
plasma membrane 5
golgi 5
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d052892_P001	Maize	endoplasmic reticulum, extracellular	40.85	55.83
Zm00001d020944_P001	Maize	extracellular	56.71	54.55
EER99094	Sorghum	mitochondrion, vacuole	57.32	53.56
TraesCS5A01G266200.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	50.3	52.05
HORVU5Hr1G073500.1	Barley	extracellular, vacuole	54.88	51.43
TraesCS5B01G265900.1	Wheat	extracellular	54.27	50.42
Os09t0491612-01	Rice	extracellular	52.44	50.29
GSMUA_Achr9P12430_001	Banana	extracellular	35.98	39.07
GSMUA_Achr4P01520_001	Banana	cytosol	26.52	31.64
GSMUA_Achr1P06920_001	Banana	plastid	21.65	31.56
GSMUA_Achr10P...	Banana	cytosol	25.61	30.55
GSMUA_Achr3P03820_001	Banana	endoplasmic reticulum, extracellular	32.93	29.03
GSMUA_AchrUn_...	Banana	cytosol	17.68	17.47

Protein Annotations

EnsemblPlants:GSMUA_Achr6P22250_001	EnsemblPlants:GSMUA_Achr6T22250_001	EnsemblPlantsGene:GSMUA_Achr6G22250_001	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_N_plant-typ	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt
PANTHER:PTHR44138	PANTHER:PTHR44138:SF2	PFAM:PF08263	PFAM:PF13516	SEG:seg	SignalP:SignalP-noTM
SUPFAM:SSF52058	UniParc:UPI0002959A57	UniProt:M0T973	MapMan:26.8.3.4	:	:

Description

Polygalacturonase inhibitor 1 [Source:GMGC_GENE;Acc:GSMUA_Achr6G22250_001]

Coordinates

chr6:+:19154192..19155178

Molecular Weight (calculated)

35949.4 Da

IEP (calculated)

7.443

GRAVY (calculated)

0.020

Length

328 amino acids

Sequence
(BLAST)

001: MSSPALSFAF FLLLISSSTL LVASMDCNKG DREALLKIKE GLGNPPQLST WIPATNCCAW DNLYCDDTGR VYNVYIYNAD VTAALPVAFG DLSALQSLSL
101: QDMPGLTGPI PRSFAKLSQL YLLSISNTSI TGPVPDFLTS TNLSALTLPS NKLSGPIPPA LSRLPYLRYV DLSHNMLSGP IPQGLLHGEY QFLILSNNRL
201: TGAIPSSYGK GDVNTIDLGH NRLTGYPSFL FDRTRPTVKL DLSWNELAFD ITKAALPWHL EYLDLSHNRI RGGVPKSLKD LYKLLVLNLT YNELCGEIPT
301: GRAMAYHGAE CYLHNKCLCG TPLPPCRH

Best Arabidopsis Sequence Match ( AT5G06860.1 )
(BLAST)

001: MDKTATLCLL FLFTFLTTCL SKDLCNQNDK NTLLKIKKSL NNPYHLASWD PQTDCCSWYC LECGDATVNH RVTALTIFSG QISGQIPAEV GDLPYLETLV
101: FRKLSNLTGT IQPTIAKLKN LRMLRLSWTN LTGPIPDFIS QLKNLEFLEL SFNDLSGSIP SSLSTLPKIL ALELSRNKLT GSIPESFGSF PGTVPDLRLS
201: HNQLSGPIPK SLGNIDFNRI DLSRNKLQGD ASMLFGSNKT TWSIDLSRNM FQFDISKVDI PKTLGILDLN HNGITGNIPV QWTEAPLQFF NVSYNKLCGH
301: IPTGGKLQTF DSYSYFHNKC LCGAPLEICK

Arabidopsis Description

PGIP1PGIP1 [Source:UniProtKB/TrEMBL;Acc:A0A178UBN4]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.