CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, vacuole

Predictor Summary:

nucleus 2
plastid 1
mitochondrion 3
cytosol 1
extracellular 3
endoplasmic reticulum 2
vacuole 3
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, vacuole
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	extracellular
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	mitochondrion
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d020944_P001	Maize	extracellular	87.18	89.74
TraesCS5A01G266200.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	66.67	73.82
HORVU5Hr1G073500.1	Barley	extracellular, vacuole	69.8	70.0
TraesCS5B01G265900.1	Wheat	extracellular	70.37	69.97
Os09t0491612-01	Rice	extracellular	66.95	68.71
GSMUA_Achr6P22250_001	Banana	extracellular	53.56	57.32
EER99569	Sorghum	extracellular	42.73	45.05
OQU81782	Sorghum	extracellular	41.03	41.86
EES17528	Sorghum	extracellular	39.6	41.0
EES17529	Sorghum	extracellular	39.32	40.47
EER94664	Sorghum	extracellular	32.19	40.07
EES17527	Sorghum	extracellular, plastid	38.18	34.1
EES14271	Sorghum	cytosol	33.05	28.93
KXG27431	Sorghum	vacuole	32.76	21.95

Protein Annotations

MapMan:26.8.3.4	Gene3D:3.80.10.10	UniProt:C5X3Y0	EnsemblPlants:EER99094	ProteinID:EER99094	ProteinID:EER99094.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_N_plant-typ
InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	PFAM:PF00560	PFAM:PF08263	PFAM:PF13516	PANTHER:PTHR44138
PANTHER:PTHR44138:SF2	EnsemblPlantsGene:SORBI_3002G248300	SUPFAM:SSF52058	SignalP:SignalP-noTM	UniParc:UPI0001A8428B	RefSeq:XP_002462573.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:63608321..63610185

Molecular Weight (calculated)

36813.4 Da

IEP (calculated)

5.868

GRAVY (calculated)

0.224

Length

351 amino acids

Sequence
(BLAST)

001: MAARARAKAI TAMSTMSSST PLISSMSLAL LLLFSACYTG PSSAADCDPA DRAALLRVKA QLGDPAGLSS WLPSTNCCAW DPAVFCDAAG RVTGLALYSL
101: PDVSARVPPA LGDLAALEIL QVDSVPGLAG PVPASFANLT RLLDLDINGT SISGPVPGCL LAGAVNLRTL VIANSKLAGP IPSSLAALQG LRYLDLSGNM
201: LSGAIPPGLL HGGSRFLILS NNRLTGEIPS DYGDGDVDTI DLSRNQLTGD PSPFLFGITK PAVKIDLSWN QLEFDLTEVS FPHHLRFLDL SHNRVTGRVA
301: KSLMDVKLEH FNVSYNQLCG EVPAGRFMSM HGADCYAHNQ CLCGTPLPPC N

Best Arabidopsis Sequence Match ( AT5G06860.1 )
(BLAST)

001: MDKTATLCLL FLFTFLTTCL SKDLCNQNDK NTLLKIKKSL NNPYHLASWD PQTDCCSWYC LECGDATVNH RVTALTIFSG QISGQIPAEV GDLPYLETLV
101: FRKLSNLTGT IQPTIAKLKN LRMLRLSWTN LTGPIPDFIS QLKNLEFLEL SFNDLSGSIP SSLSTLPKIL ALELSRNKLT GSIPESFGSF PGTVPDLRLS
201: HNQLSGPIPK SLGNIDFNRI DLSRNKLQGD ASMLFGSNKT TWSIDLSRNM FQFDISKVDI PKTLGILDLN HNGITGNIPV QWTEAPLQFF NVSYNKLCGH
301: IPTGGKLQTF DSYSYFHNKC LCGAPLEICK

Arabidopsis Description

PGIP1PGIP1 [Source:UniProtKB/TrEMBL;Acc:A0A178UBN4]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.