Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 4
- golgi 4
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d020944_P001 | Maize | extracellular | 59.58 | 41.94 |
| GSMUA_Achr6P22250_001 | Banana | extracellular | 55.83 | 40.85 |
| Zm00001d021836_P001 | Maize | extracellular | 42.5 | 30.72 |
| Zm00001d006623_P001 | Maize | extracellular | 42.08 | 30.51 |
| Zm00001d035753_P001 | Maize | extracellular | 40.0 | 28.15 |
| Zm00001d035756_P001 | Maize | vacuole | 39.17 | 26.86 |
| Zm00001d003317_P001 | Maize | extracellular | 37.5 | 26.79 |
| Zm00001d029583_P001 | Maize | extracellular | 26.25 | 22.18 |
| Zm00001d031434_P001 | Maize | extracellular | 32.08 | 20.21 |
| Zm00001d026617_P001 | Maize | extracellular | 29.17 | 13.57 |
Protein Annotations
| EnsemblPlants:Zm00001d052892_P001 | EnsemblPlants:Zm00001d052892_T001 | EnsemblPlantsGene:Zm00001d052892 | Gene3D:3.80.10.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:IPR001611 | InterPro:IPR032675 | InterPro:LRR_N_plant-typ | InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt |
| PANTHER:PTHR44138 | PANTHER:PTHR44138:SF2 | PFAM:PF08263 | PFAM:PF13855 | ProteinID:AQK58304.1 | SEG:seg |
| SignalP:SignalP-noTM | SUPFAM:SSF52058 | UniParc:UPI0008440CFB | UniProt:A0A1D6QKR6 | MapMan:35.1 | : |
Description
Leucine-rich repeat (LRR) family protein
Coordinates
chr4:-:203758689..203774225
Molecular Weight (calculated)
25053.3 Da
IEP (calculated)
4.852
GRAVY (calculated)
0.288
Length
240 amino acids
Sequence
(BLAST)
(BLAST)
001: MVNSSLPPPS LLLVLLFIFS NALNLPSAAM DCHSSDRAAL LKIKGELGNP PELSSWMPAT NCCAWDAAAA AAAVICSPDA GRVYLVALFQ LHVDVAAPIP
101: PAYGELPMLQ TIQLDTLPGL YGPIPASFAK LAHLEQLDIS GTQVSGPVPG FLTKTNLSAL TITNSKLTGP IPGSLSRLSS LRYLDLSGNM LSGSIPPGLL
201: HGSSRFLILS SNRLTGEVPA GYADGDMDTL DLSHNQLADP
101: PAYGELPMLQ TIQLDTLPGL YGPIPASFAK LAHLEQLDIS GTQVSGPVPG FLTKTNLSAL TITNSKLTGP IPGSLSRLSS LRYLDLSGNM LSGSIPPGLL
201: HGSSRFLILS SNRLTGEVPA GYADGDMDTL DLSHNQLADP
001: MDKTATLCLL FLFTFLTTCL SKDLCNQNDK NTLLKIKKSL NNPYHLASWD PQTDCCSWYC LECGDATVNH RVTALTIFSG QISGQIPAEV GDLPYLETLV
101: FRKLSNLTGT IQPTIAKLKN LRMLRLSWTN LTGPIPDFIS QLKNLEFLEL SFNDLSGSIP SSLSTLPKIL ALELSRNKLT GSIPESFGSF PGTVPDLRLS
201: HNQLSGPIPK SLGNIDFNRI DLSRNKLQGD ASMLFGSNKT TWSIDLSRNM FQFDISKVDI PKTLGILDLN HNGITGNIPV QWTEAPLQFF NVSYNKLCGH
301: IPTGGKLQTF DSYSYFHNKC LCGAPLEICK
101: FRKLSNLTGT IQPTIAKLKN LRMLRLSWTN LTGPIPDFIS QLKNLEFLEL SFNDLSGSIP SSLSTLPKIL ALELSRNKLT GSIPESFGSF PGTVPDLRLS
201: HNQLSGPIPK SLGNIDFNRI DLSRNKLQGD ASMLFGSNKT TWSIDLSRNM FQFDISKVDI PKTLGILDLN HNGITGNIPV QWTEAPLQFF NVSYNKLCGH
301: IPTGGKLQTF DSYSYFHNKC LCGAPLEICK
Arabidopsis Description
PGIP1PGIP1 [Source:UniProtKB/TrEMBL;Acc:A0A178UBN4]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.