Factsheet for Zm00001d021836_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 2
extracellular 5
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, plastid, secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

extracellular: 20408568
plasma membrane: 27341663

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d006623_P001	Maize	extracellular	93.07	93.35
EER99569	Sorghum	extracellular	88.86	88.59
Os07t0568700-02	Rice	extracellular	77.71	77.71
TraesCS2D01G207200.1	Wheat	extracellular	74.1	73.65
TraesCS2B01G226900.1	Wheat	extracellular	73.8	73.35
TraesCS2A01G199600.1	Wheat	extracellular	73.49	72.84
HORVU2Hr1G038990.1	Barley	plastid	74.4	67.67
Zm00001d020944_P001	Maize	extracellular	44.88	43.7
Zm00001d052892_P001	Maize	endoplasmic reticulum, extracellular	30.72	42.5
Zm00001d035753_P001	Maize	extracellular	42.17	41.06
Zm00001d029583_P001	Maize	extracellular	32.53	38.03
Zm00001d035756_P001	Maize	vacuole	39.46	37.43
Zm00001d003317_P001	Maize	extracellular	37.05	36.61
Zm00001d031434_P001	Maize	extracellular	35.24	30.71
Zm00001d026617_P001	Maize	extracellular	31.93	20.54

Protein Annotations

EntrezGene:100279844	MapMan:26.8.3.4	Gene3D:3.80.10.10	UniProt:B4FSB4	EMBL:BT040002	EMBL:BT055000
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_N_plant-typ
InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_typical-subtyp	ProteinID:ONM58768.1	PFAM:PF08263	PFAM:PF13516
PFAM:PF13855	PRINTS:PR00019	PANTHER:PTHR44138	PANTHER:PTHR44138:SF5	SMART:SM00369	SUPFAM:SSF52058
SignalP:SignalP-noTM	UniParc:UPI00017B8181	EnsemblPlantsGene:Zm00001d021836	EnsemblPlants:Zm00001d021836_P001	EnsemblPlants:Zm00001d021836_T001	SEG:seg

Description

Leucine-rich repeat (LRR) family protein

Coordinates

chr7:-:164171204..164172202

Molecular Weight (calculated)

35449.4 Da

IEP (calculated)

6.587

GRAVY (calculated)

-0.013

Length

332 amino acids

Sequence
(BLAST)

001: MASTTLLAVL LLVAASAAPA RSCSPRDLQA LLSVKQALGN PSTLSTWTPA SPDCCSWDHL RCNDAGRVNN VFIDGADDVR GQIPSAVGGL TELMSLTLFR
101: LAGLTGPIPA CLAALSNLQF LTVSHTNVSG AIPESLARLR GLDSVDLSSN QLTGGIPASF ADLPSLRSLD LGHNQLTGSI PAGLVQGQFR SLVLSYNQLT
201: GPIPRDDARD EINTVDLSHN KLTGDPSHLF AAGRPIGKVD LSWNYLDFDL SQLVFPPEMT YLDLSHNLIR GTVPLSLERL STLQKLDLSY NRLCGPLPKG
301: HGVIKHGCKP YAHNQCRKGT PLAGCQDLEW SE

Best Arabidopsis Sequence Match ( AT5G06860.1 )
(BLAST)

001: MDKTATLCLL FLFTFLTTCL SKDLCNQNDK NTLLKIKKSL NNPYHLASWD PQTDCCSWYC LECGDATVNH RVTALTIFSG QISGQIPAEV GDLPYLETLV
101: FRKLSNLTGT IQPTIAKLKN LRMLRLSWTN LTGPIPDFIS QLKNLEFLEL SFNDLSGSIP SSLSTLPKIL ALELSRNKLT GSIPESFGSF PGTVPDLRLS
201: HNQLSGPIPK SLGNIDFNRI DLSRNKLQGD ASMLFGSNKT TWSIDLSRNM FQFDISKVDI PKTLGILDLN HNGITGNIPV QWTEAPLQFF NVSYNKLCGH
301: IPTGGKLQTF DSYSYFHNKC LCGAPLEICK

Arabidopsis Description

PGIP1PGIP1 [Source:UniProtKB/TrEMBL;Acc:A0A178UBN4]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.