Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- plastid 2
- extracellular 5
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 4
- golgi 4
- cytosol 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
extracellular:
20408568
mitochondrion: 27297264 plasma membrane: 27341663 |
msms PMID:
27297264
doi
Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.
msms PMID:
27341663
doi
Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Zm00001d021836_P001 | Maize | extracellular | 93.35 | 93.07 |
EER99569 | Sorghum | extracellular | 90.03 | 89.49 |
Os07t0568700-02 | Rice | extracellular | 78.55 | 78.31 |
TraesCS2D01G207200.1 | Wheat | extracellular | 75.83 | 75.15 |
TraesCS2B01G226900.1 | Wheat | extracellular | 75.23 | 74.55 |
TraesCS2A01G199600.1 | Wheat | extracellular | 75.23 | 74.33 |
HORVU2Hr1G038990.1 | Barley | plastid | 75.23 | 68.22 |
Zm00001d020944_P001 | Maize | extracellular | 45.32 | 43.99 |
Zm00001d052892_P001 | Maize | endoplasmic reticulum, extracellular | 30.51 | 42.08 |
Zm00001d035753_P001 | Maize | extracellular | 41.69 | 40.47 |
Zm00001d035756_P001 | Maize | vacuole | 40.48 | 38.29 |
Zm00001d029583_P001 | Maize | extracellular | 32.02 | 37.32 |
Zm00001d003317_P001 | Maize | extracellular | 36.86 | 36.31 |
Zm00001d031434_P001 | Maize | extracellular | 34.74 | 30.18 |
Zm00001d026617_P001 | Maize | extracellular | 30.82 | 19.77 |
Protein Annotations
MapMan:26.8.3.4 | Gene3D:3.80.10.10 | UniProt:A0A1D6EZ64 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
InterPro:IPR001611 | InterPro:IPR032675 | InterPro:LRR_N_plant-typ | InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt | InterPro:Leu-rich_rpt_typical-subtyp |
ProteinID:ONM24570.1 | PFAM:PF08263 | PFAM:PF13516 | PFAM:PF13855 | PRINTS:PR00019 | PFscan:PS51450 |
PANTHER:PTHR44138 | PANTHER:PTHR44138:SF5 | SMART:SM00369 | SUPFAM:SSF52058 | SignalP:SignalP-noTM | UniParc:UPI0000038A5F |
EnsemblPlantsGene:Zm00001d006623 | EnsemblPlants:Zm00001d006623_P001 | EnsemblPlants:Zm00001d006623_T001 | SEG:seg | : | : |
Description
Polygalacturonase inhibitor 1
Coordinates
chr2:-:212787428..212788423
Molecular Weight (calculated)
35350.4 Da
IEP (calculated)
7.756
GRAVY (calculated)
0.010
Length
331 amino acids
Sequence
(BLAST)
(BLAST)
001: MASTTTTFLA VLLVVAASAA PARSCSPRDI HALLSVKQAL GNPASLSTWT PASPNCCAWD HLRCNDAGRV NNVFIDGADD VRGQIPSAVG GLTELMSLTL
101: FRLPGLTGAI PACLTALSNL QFLTVSHTNV SGAIPESLAR LRGLDSVDLS SNRLTGGIPA AFADLPSLRS LDLRHNQLTG PIPAGLVQGQ FRSLVLSYNQ
201: LTGPIPRDDA RDEINTVDLS HNRLTGDPSH LFAAGRPIGK VDLSWNYLNF DLSRLVFPPE LTYLDLSHNL IRGTVPLSLE RLSTLQKLDL SYNRLCGPLP
301: KGHGVIKHGC KPYAHNQCSK GTPLAGCQDL E
101: FRLPGLTGAI PACLTALSNL QFLTVSHTNV SGAIPESLAR LRGLDSVDLS SNRLTGGIPA AFADLPSLRS LDLRHNQLTG PIPAGLVQGQ FRSLVLSYNQ
201: LTGPIPRDDA RDEINTVDLS HNRLTGDPSH LFAAGRPIGK VDLSWNYLNF DLSRLVFPPE LTYLDLSHNL IRGTVPLSLE RLSTLQKLDL SYNRLCGPLP
301: KGHGVIKHGC KPYAHNQCSK GTPLAGCQDL E
001: MDKTMTLFLL LSTLLLTTSL AKDLCHKDDK TTLLKIKKSL NNPYHLASWD PKTDCCSWYC LECGDATVNH RVTSLIIQDG EISGQIPPEV GDLPYLTSLI
101: FRKLTNLTGH IQPTIAKLKN LTFLRLSWTN LTGPVPEFLS QLKNLEYIDL SFNDLSGSIP SSLSSLRKLE YLELSRNKLT GPIPESFGTF SGKVPSLFLS
201: HNQLSGTIPK SLGNPDFYRI DLSRNKLQGD ASILFGAKKT TWIVDISRNM FQFDLSKVKL AKTLNNLDMN HNGITGSIPA EWSKAYFQLL NVSYNRLCGR
301: IPKGEYIQRF DSYSFFHNKC LCGAPLPSCK
101: FRKLTNLTGH IQPTIAKLKN LTFLRLSWTN LTGPVPEFLS QLKNLEYIDL SFNDLSGSIP SSLSSLRKLE YLELSRNKLT GPIPESFGTF SGKVPSLFLS
201: HNQLSGTIPK SLGNPDFYRI DLSRNKLQGD ASILFGAKKT TWIVDISRNM FQFDLSKVKL AKTLNNLDMN HNGITGSIPA EWSKAYFQLL NVSYNRLCGR
301: IPKGEYIQRF DSYSFFHNKC LCGAPLPSCK
Arabidopsis Description
PGIP2PGIP2 [Source:UniProtKB/TrEMBL;Acc:A0A178UDM1]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.