Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- cytosol 1
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G181200.1 | Wheat | nucleus | 83.56 | 97.27 |
| TraesCS3D01G186100.1 | Wheat | cytosol | 82.89 | 96.48 |
| TraesCS3B01G211300.1 | Wheat | cytosol | 82.89 | 96.48 |
| EES00531 | Sorghum | cytosol | 67.45 | 79.13 |
| Solyc03g119010.2.1 | Tomato | nucleus | 48.32 | 60.0 |
| PGSC0003DMT400014424 | Potato | nucleus | 48.32 | 57.37 |
| KRH60495 | Soybean | endoplasmic reticulum, nucleus | 48.32 | 56.92 |
| KRH41788 | Soybean | nucleus | 47.65 | 56.35 |
| Zm00001d040357_P001 | Maize | cytosol | 66.78 | 55.12 |
| VIT_17s0000g02840.t01 | Wine grape | cytosol, mitochondrion, nucleus | 37.92 | 54.59 |
| AT3G18165.1 | Thale cress | cytosol | 45.97 | 54.15 |
| CDX95551 | Canola | cytosol | 45.97 | 54.15 |
| Bra021297.1-P | Field mustard | cytosol | 45.3 | 53.36 |
| CDY24431 | Canola | nucleus | 45.3 | 53.36 |
| CDX92209 | Canola | nucleus | 45.3 | 53.36 |
| Bra022288.1-P | Field mustard | nucleus | 45.3 | 53.36 |
| CDY24603 | Canola | cytosol | 14.09 | 47.73 |
| GSMUA_Achr3P18380_001 | Banana | cytosol | 29.53 | 43.56 |
| CDY18500 | Canola | cytosol | 46.31 | 23.04 |
Protein Annotations
| MapMan:16.4.5.1.1 | UniProt:A0A287KSF1 | ncoils:Coil | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005730 | GO:GO:0006139 | GO:GO:0006397 | GO:GO:0006950 | GO:GO:0007154 |
| GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009605 | GO:GO:0009607 | GO:GO:0009870 |
| GO:GO:0009987 | GO:GO:0010204 | GO:GO:0042742 | GO:GO:0050832 | EnsemblPlantsGene:HORVU3Hr1G037080 | EnsemblPlants:HORVU3Hr1G037080.1 |
| PFAM:PF05700 | PANTHER:PTHR13296 | InterPro:SPF27 | UniParc:UPI000B46A88E | SEG:seg | : |
Description
No Description!
Coordinates
chrchr3H:-:210300856..210306467
Molecular Weight (calculated)
33544.3 Da
IEP (calculated)
7.570
GRAVY (calculated)
-0.532
Length
298 amino acids
Sequence
(BLAST)
(BLAST)
001: CALSFFLQPH CSPTRHPNLP RARSLSLALL ASAATCSRAA AVMALPATRE VLMLEAPPSE AAGVPWRPPP DAETVDALPY IDGDYGDPAV KREVDRLVEE
101: EMRRAHRKPA DFLRDLPPYP IIGFENHPML AKEYERVRAG KPPATIEMSR YGLEPPPANK RNDVVAWKQA LRNAQSQLQH QIVRIENLEL MLKHGVEVWK
201: LQNRKMESVL SRTQKMTLEY NEKIETVNRE RKFHQQNTGG QLHALTVEWQ ELCQKNIAIQ AACVDLQNQI DQLKLEAKEQ GMPMAGSNET NPQASVGI
101: EMRRAHRKPA DFLRDLPPYP IIGFENHPML AKEYERVRAG KPPATIEMSR YGLEPPPANK RNDVVAWKQA LRNAQSQLQH QIVRIENLEL MLKHGVEVWK
201: LQNRKMESVL SRTQKMTLEY NEKIETVNRE RKFHQQNTGG QLHALTVEWQ ELCQKNIAIQ AACVDLQNQI DQLKLEAKEQ GMPMAGSNET NPQASVGI
001: MATNNGDVLM LEATPEAARP WASAANAEVI DALPYIDDDY GNPLIKSEVD RLVEEEMRRS SKKPADFLKD LPPLPKFDFK NCPVLGKEYE RVRAGKPPVR
101: IDFESRYKLE MPPANKRNDD AAWKQYLQKN QRSLQQKLIE LENLELMSKL GPELWRQNNH RLEVFLTRMQ RLAQEQNEEI EKVNRERKYH QQTTSYELNA
201: LSQEWRQLCV KNMEIQSACA MLETQIDSFK KEAAERGWNL EEKLENVEPL QMQ
101: IDFESRYKLE MPPANKRNDD AAWKQYLQKN QRSLQQKLIE LENLELMSKL GPELWRQNNH RLEVFLTRMQ RLAQEQNEEI EKVNRERKYH QQTTSYELNA
201: LSQEWRQLCV KNMEIQSACA MLETQIDSFK KEAAERGWNL EEKLENVEPL QMQ
Arabidopsis Description
MOS4Pre-mRNA-splicing factor SPF27 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q949S9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.