Factsheet for HORVU1Hr1G039050.13

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytoskeleton, cytosol
MultiLoc:	cytosol
WoLF PSORT:	cytoskeleton
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU5Hr1G080010.3
HORVU5Hr1G108630.3

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G04510.1	HORVU5Hr1G080010.3	AT1G09770.1	19629177
AT1G04510.1	HORVU5Hr1G108630.3	AT1G09770.1	19629177

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G165900.2	Wheat	cytosol	98.67	98.86
TraesCS1A01G148000.1	Wheat	cytosol	98.67	97.93
TraesCS1D01G145900.2	Wheat	cytosol	98.48	97.74
Zm00001d032763_P003	Maize	cytosol	89.77	90.11
KXG38386	Sorghum	cytosol	89.77	90.11
Zm00001d014078_P001	Maize	cytosol	85.23	82.42
GSMUA_Achr11P...	Banana	cytosol	78.79	79.09
GSMUA_Achr8P12630_001	Banana	cytosol	78.41	78.71
VIT_05s0049g01840.t01	Wine grape	cytosol	73.67	74.24
HORVU4Hr1G083960.3	Barley	plastid	81.63	73.55
Zm00001d017109_P001	Maize	cytosol	25.0	72.53
PGSC0003DMT400044280	Potato	cytosol	71.02	71.98
KRG90340	Soybean	nucleus	71.4	71.81
Solyc09g090660.2.1	Tomato	cytosol, nucleus	70.83	71.78
KRH33584	Soybean	nucleus	71.02	71.43
Zm00001d011008_P001	Maize	extracellular	21.97	71.17
AT1G04510.1	Thale cress	cytosol	70.27	70.94
CDX89818	Canola	cytosol	69.51	70.31
Bra015322.1-P	Field mustard	cytosol	69.51	70.31
AT2G33340.1	Thale cress	cytosol	69.7	70.1
CDY37731	Canola	cytosol	69.7	70.1
CDY23752	Canola	cytosol	69.51	69.9
Bra021844.1-P	Field mustard	nucleus	58.33	69.68
Bra005504.1-P	Field mustard	cytosol	69.13	69.52
CDY17165	Canola	cytosol	69.13	69.52
PGSC0003DMT400075431	Potato	cytosol	58.52	68.51
CDY15510	Canola	plastid	69.89	67.09
CDY18239	Canola	endoplasmic reticulum, plastid	68.75	65.88
CDX86629	Canola	plastid	59.85	59.74
CDY19484	Canola	plastid	68.75	59.61
Bra030575.1-P	Field mustard	cytosol	64.02	58.88
CDY49475	Canola	extracellular	8.52	42.86
CDY29722	Canola	mitochondrion	7.01	22.98

Protein Annotations

MapMan:16.4.5.1.4	Gene3D:2.130.10.10	Gene3D:3.30.40.10	UniProt:A0A287F7D4	ncoils:Coil	GO:GO:0000398
GO:GO:0000974	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006464	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
GO:GO:0061630	EnsemblPlantsGene:HORVU1Hr1G039050	EnsemblPlants:HORVU1Hr1G039050.13	InterPro:IPR001680	InterPro:IPR003613	InterPro:IPR013083
InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	PFAM:PF08606	PFscan:PS50082	PFscan:PS50294
PFscan:PS51698	PANTHER:PTHR43995	InterPro:Pre-mRNA_splic_Prp19	InterPro:Prp19	SMART:SM00320	SMART:SM00504
SUPFAM:SSF50978	SUPFAM:SSF57850	UniParc:UPI000B469707	InterPro:Ubox_domain	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	InterPro:Znf_RING/FYVE/PHD	:	:	:

Description

No Description!

Coordinates

chrchr1H:-:272999904..273010295

Molecular Weight (calculated)

57786.7 Da

IEP (calculated)

6.206

GRAVY (calculated)

-0.270

Length

528 amino acids

Sequence
(BLAST)

001: MICAISGEVP DEPVVSKRSG LLFERRLVER YIEDHGKCPV TKEELSMDDI VLVKTNKVVR PRPLQAASIP GLLGIFQNEW DALMLSNFAL EQQLHTARQE
101: LSHALYQHDA ACRVIARLKK ERDESRALLA LAERQIPASM AGVAPAAVVS NGKRAMEDEI GPDGKKIRPG INPVMIDELT ECNTMLSAQR KKRQVPPSLA
201: SIDELEKYTQ ISSHPLHKTN KPGILSMDIH PSKDIVATGG IDTNAVLFDR TSGQILCTLA GHSKKITTLK FVPRDELVVT GSADKVTVRI WQGTEEGNYS
301: CIHTLKDHTA EVEAVTVHAT QKYFVTAAKD NTWCFYDIST GSCLSQVGEA SGQEGYTSAS FHPDGLILGT GTTEAVVKIW DVKTQSNVAK FEGHTGPVTA
401: MSFSENGYFL ATAALDGVKL WDLRKLRNFR TFSPYDSDTP TNSVEFDFSG TYLAVAGSDI RVYQVANVKT EWNLIKTLPD VSGTGKVTSA KFGTDAKYIA
501: VGSMDRNLRI FGLPGDDQMD DDAKSSAE

Best Arabidopsis Sequence Match ( AT1G04510.1 )
(BLAST)

001: MNCAISGEVP EEPVVSKKSG LLYEKRLIQT HISDYGKCPV TGEPHTLDDI VPIKTGKIVK PKPLHTASIP GLLGTFQTEW DSLMLSNFAL EQQLHTARQE
101: LSHALYQHDA ACRVIARLKK ERDESRQLLA EAERQLPAAP EVATSNAALS NGKRGIDDGE QGPNAKKMRL GISAEVITEL TDCNAALSQQ RKKRQIPKTL
201: ASVDALEKFT QLSSHPLHKT NKPGIFSMDI LHSKDVIATG GIDTTAVLFD RPSGQILSTL TGHSKKVTSI KFVGDTDLVL TASSDKTVRI WGCSEDGNYT
301: SRHTLKDHSA EVRAVTVHAT NKYFVSASLD STWCFYDLSS GLCLAQVTDA SENDVNYTAA AFHPDGLILG TGTAQSIVKI WDVKSQANVA KFGGHNGEIT
401: SISFSENGYF LATAALDGVR LWDLRKLKNF RTFDFPDANS VEFDHSGSYL GIAASDIRVF QAASVKAEWN PIKTLPDLSG TGKATSVKFG LDSKYIAVGS
501: MDRNLRIFGL PDDDNTEDSA QDS

Arabidopsis Description

PRP19APre-mRNA-processing factor 19 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q94BR4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.