Factsheet for Zm00001d011008_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 2
cytosol 1
extracellular 4
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, plastid, secretory
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d021987_P001	Maize	cytosol	35.58	100.0
Zm00001d017109_P001	Maize	cytosol	66.26	59.34
Zm00001d032763_P003	Maize	cytosol	76.07	23.57
Zm00001d014078_P001	Maize	cytosol	76.69	22.89
TraesCS1B01G165900.2	Wheat	cytosol	71.17	22.01
HORVU1Hr1G039050.13	Barley	cytosol	71.17	21.97
TraesCS1A01G148000.1	Wheat	cytosol	71.17	21.8
TraesCS1D01G145900.2	Wheat	cytosol	71.17	21.8
GSMUA_Achr8P12630_001	Banana	cytosol	66.87	20.72
GSMUA_Achr11P...	Banana	cytosol	66.26	20.53
Zm00001d051091_P001	Maize	cytosol	5.52	8.57
Zm00001d015939_P001	Maize	cytosol	2.45	3.01

Protein Annotations

MapMan:16.4.5.1.4	Gene3D:2.130.10.10	UniProt:A0A1D6FVI4	ProteinID:AQK95452.1	GO:GO:0000398	GO:GO:0000974
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0006139
GO:GO:0006259	GO:GO:0006281	GO:GO:0006464	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0061630	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR43995	InterPro:Prp19	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0008448813	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	EnsemblPlantsGene:Zm00001d011008	EnsemblPlants:Zm00001d011008_P001
EnsemblPlants:Zm00001d011008_T001	:	:	:	:	:

Description

Pre-mRNA-processing factor 19 homolog 2

Coordinates

chr8:-:136515413..136519991

Molecular Weight (calculated)

17952.3 Da

IEP (calculated)

6.504

GRAVY (calculated)

0.125

Length

163 amino acids

Sequence
(BLAST)

001: MVVAAASHTA LFFGKLPARI LPDTCYLPHT HAHIFLLHLS MHIIVHDYFY QVGEASGQEG YTSASFHPDG LILGTGTTDA VVKIWDVKAQ SNVAKFEGHV
101: GPVTAMSFSE NGYFLATAAH DGVKLWDLRK LRNFRTFSSY DLDTPTNTVE FDFSGNYLAI GLI

Best Arabidopsis Sequence Match ( AT2G33340.1 )
(BLAST)

001: MNCAISGEVP VEPVVSTKSG LLFERRLIER HISDYGKCPV TGEPLTIDDI VPIKTGEIIK PKTLHTASIP GLLGTFQNEW DGLMLSNFAL EQQLHTARQE
101: LSHALYQHDS ACRVIARLKK ERDEARQLLA EVERHIPAAP EAVTANAALS NGKRAAVDEE LGPDAKKLCP GISAEIITEL TDCNAALSQK RKKRQIPQTL
201: ASIDTLERFT QLSSHPLHKT NKPGICSMDI LHSKDVIATG GVDATAVLFD RPSGQILSTL TGHSKKVTSV KFVGDSDLVL TASADKTVRI WRNPGDGNYA
301: CGYTLNDHSA EVRAVTVHPT NKYFVSASLD GTWCFYDLSS GSCLAQVSDD SKNVDYTAAA FHPDGLILGT GTSQSVVKIW DVKSQANVAK FDGHTGEVTA
401: ISFSENGYFL ATAAEDGVRL WDLRKLRNFK SFLSADANSV EFDPSGSYLG IAASDIKVYQ TASVKAEWNL IKTLPDLSGT GKATCVKFGS DAQYVAVGSM
501: DRNLRIFGLP GDEKANVDDD SAQDS

Arabidopsis Description

PRP19BPre-mRNA-processing factor 19 homolog 2 [Source:UniProtKB/Swiss-Prot;Acc:O22785]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.