Factsheet for Zm00001d017109_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d021987_P001	Maize	cytosol	29.12	91.38
Zm00001d011008_P001	Maize	extracellular	59.34	66.26
Zm00001d032763_P003	Maize	cytosol	78.57	27.19
Zm00001d014078_P001	Maize	cytosol	79.67	26.56
TraesCS1B01G165900.2	Wheat	cytosol	72.53	25.05
HORVU1Hr1G039050.13	Barley	cytosol	72.53	25.0
TraesCS1A01G148000.1	Wheat	cytosol	72.53	24.81
TraesCS1D01G145900.2	Wheat	cytosol	72.53	24.81
GSMUA_Achr8P12630_001	Banana	cytosol	68.68	23.76
GSMUA_Achr11P...	Banana	cytosol	67.03	23.19
Zm00001d051091_P001	Maize	cytosol	2.2	3.81
Zm00001d015939_P001	Maize	cytosol	0.0	0.0

Protein Annotations

MapMan:16.4.5.1.4	Gene3D:2.130.10.10	UniProt:A0A1D6HCA7	ProteinID:AQK72333.1	GO:GO:0000398	GO:GO:0000974
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0006139
GO:GO:0006259	GO:GO:0006281	GO:GO:0006464	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0061630	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR43995	InterPro:Prp19	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000844663C	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	EnsemblPlantsGene:Zm00001d017109	EnsemblPlants:Zm00001d017109_P001
EnsemblPlants:Zm00001d017109_T001	:	:	:	:	:

Description

Pre-mRNA-processing factor 19 homolog 2

Coordinates

chr5:-:185664949..185666410

Molecular Weight (calculated)

20026.3 Da

IEP (calculated)

5.557

GRAVY (calculated)

-0.312

Length

182 amino acids

Sequence
(BLAST)

001: MKANQTPQID APTLDPRSQG KVEAVTVHVT QKYFVSASKD NSWCFYDIST GSCLTQVGEA SGQEGYTSAS FHPDGLILGT GTTDAVVKIW DLKAQSNIAK
101: FEGHVGPVTV MSFSENGYFL ATTAHDGVKL WDLRKLRNFR TFSPYDLDTP TNTVEFDFSG NYLAIVGSDI IDIYRPHKTT TQ

Best Arabidopsis Sequence Match ( AT1G04510.1 )
(BLAST)

001: MNCAISGEVP EEPVVSKKSG LLYEKRLIQT HISDYGKCPV TGEPHTLDDI VPIKTGKIVK PKPLHTASIP GLLGTFQTEW DSLMLSNFAL EQQLHTARQE
101: LSHALYQHDA ACRVIARLKK ERDESRQLLA EAERQLPAAP EVATSNAALS NGKRGIDDGE QGPNAKKMRL GISAEVITEL TDCNAALSQQ RKKRQIPKTL
201: ASVDALEKFT QLSSHPLHKT NKPGIFSMDI LHSKDVIATG GIDTTAVLFD RPSGQILSTL TGHSKKVTSI KFVGDTDLVL TASSDKTVRI WGCSEDGNYT
301: SRHTLKDHSA EVRAVTVHAT NKYFVSASLD STWCFYDLSS GLCLAQVTDA SENDVNYTAA AFHPDGLILG TGTAQSIVKI WDVKSQANVA KFGGHNGEIT
401: SISFSENGYF LATAALDGVR LWDLRKLKNF RTFDFPDANS VEFDHSGSYL GIAASDIRVF QAASVKAEWN PIKTLPDLSG TGKATSVKFG LDSKYIAVGS
501: MDRNLRIFGL PDDDNTEDSA QDS

Arabidopsis Description

PRP19APre-mRNA-processing factor 19 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q94BR4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.