Factsheet for Zm00001d015939_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d051091_P001	Maize	cytosol	42.11	53.33
Zm00001d032763_P003	Maize	cytosol	77.44	19.58
Zm00001d014078_P001	Maize	cytosol	76.69	18.68
Zm00001d011008_P001	Maize	extracellular	3.01	2.45
Zm00001d017109_P001	Maize	cytosol	0.0	0.0
Zm00001d021987_P001	Maize	cytosol	0.0	0.0

Protein Annotations

Gene3D:3.10.290.40	Gene3D:3.30.40.10	MapMan:35.1	UniProt:A0A1D6H4M4	ProteinID:AQK69773.1	GO:GO:0000398
GO:GO:0000974	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005575	GO:GO:0006139
GO:GO:0006259	GO:GO:0006281	GO:GO:0006464	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0061630	InterPro:IPR003613
InterPro:IPR013083	PFAM:PF04564	PFAM:PF08071	PFAM:PF08606	ScanProsite:PS00528	PFscan:PS51698
PANTHER:PTHR43995	InterPro:Pre-mRNA_splic_Prp19	InterPro:Prp19	InterPro:Ribosomal_S4e_N	InterPro:Ribosomal_S4e_N_CS	SMART:SM00504
SUPFAM:SSF57850	UniParc:UPI000842E373	InterPro:Ubox_domain	EnsemblPlantsGene:Zm00001d015939	EnsemblPlants:Zm00001d015939_P001	EnsemblPlants:Zm00001d015939_T001
InterPro:Znf_RING/FYVE/PHD	:	:	:	:	:

Description

Pre-mRNA-processing factor 19 homolog 2

Coordinates

chr5:+:132838540..132842358

Molecular Weight (calculated)

15318.9 Da

IEP (calculated)

9.800

GRAVY (calculated)

-0.320

Length

133 amino acids

Sequence
(BLAST)

001: MIYAISGEVP DEPVVSKMSG LLFERRLIER YIEDHSKCPI TKEELTMDDI VPIKTNKVVK PRPLQATSIP GLLGIFQNEW DVLMLSNFAL ERQLHTARQE
101: LSHALYQARG LKKHLKRLNK PKHWMLDKLG GAF

Best Arabidopsis Sequence Match ( AT1G04510.1 )
(BLAST)

001: MNCAISGEVP EEPVVSKKSG LLYEKRLIQT HISDYGKCPV TGEPHTLDDI VPIKTGKIVK PKPLHTASIP GLLGTFQTEW DSLMLSNFAL EQQLHTARQE
101: LSHALYQHDA ACRVIARLKK ERDESRQLLA EAERQLPAAP EVATSNAALS NGKRGIDDGE QGPNAKKMRL GISAEVITEL TDCNAALSQQ RKKRQIPKTL
201: ASVDALEKFT QLSSHPLHKT NKPGIFSMDI LHSKDVIATG GIDTTAVLFD RPSGQILSTL TGHSKKVTSI KFVGDTDLVL TASSDKTVRI WGCSEDGNYT
301: SRHTLKDHSA EVRAVTVHAT NKYFVSASLD STWCFYDLSS GLCLAQVTDA SENDVNYTAA AFHPDGLILG TGTAQSIVKI WDVKSQANVA KFGGHNGEIT
401: SISFSENGYF LATAALDGVR LWDLRKLKNF RTFDFPDANS VEFDHSGSYL GIAASDIRVF QAASVKAEWN PIKTLPDLSG TGKATSVKFG LDSKYIAVGS
501: MDRNLRIFGL PDDDNTEDSA QDS

Arabidopsis Description

PRP19APre-mRNA-processing factor 19 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q94BR4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.