Factsheet for Zm00001d014078_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d021987_P001	Maize	cytosol	10.26	96.55
Zm00001d032763_P003	Maize	cytosol	88.83	92.21
KXG38386	Sorghum	cytosol	88.1	91.44
TraesCS1B01G165900.2	Wheat	cytosol	82.97	85.96
HORVU1Hr1G039050.13	Barley	cytosol	82.42	85.23
TraesCS1A01G148000.1	Wheat	cytosol	82.97	85.15
TraesCS1D01G145900.2	Wheat	cytosol	82.78	84.96
Zm00001d017109_P001	Maize	cytosol	26.56	79.67
GSMUA_Achr11P...	Banana	cytosol	74.91	77.76
GSMUA_Achr8P12630_001	Banana	cytosol	74.36	77.19
Zm00001d015939_P001	Maize	cytosol	18.68	76.69
Zm00001d011008_P001	Maize	extracellular	22.89	76.69
Zm00001d051091_P001	Maize	cytosol	11.72	60.95

Protein Annotations

EntrezGene:100191855	MapMan:16.4.5.1.4	Gene3D:2.130.10.10	Gene3D:3.30.40.10	UniProt:A0A1D6GPS2	ProteinID:AQK65172.1
ncoils:Coil	GO:GO:0000398	GO:GO:0000974	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281
GO:GO:0006464	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	GO:GO:0061630	InterPro:IPR001680	InterPro:IPR003613	InterPro:IPR013083
InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	PFAM:PF08606	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	PFscan:PS51698	PANTHER:PTHR43995	InterPro:Pre-mRNA_splic_Prp19	InterPro:Prp19	SMART:SM00320
SMART:SM00504	SUPFAM:SSF50978	SUPFAM:SSF57850	UniParc:UPI000845553C	InterPro:Ubox_domain	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	EnsemblPlantsGene:Zm00001d014078	EnsemblPlants:Zm00001d014078_P001
EnsemblPlants:Zm00001d014078_T001	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

Pre-mRNA-processing factor 19 homolog 2

Coordinates

chr5:+:31710721..31721035

Molecular Weight (calculated)

60499.1 Da

IEP (calculated)

6.401

GRAVY (calculated)

-0.288

Length

546 amino acids

Sequence
(BLAST)

001: MICAISGEVP DEPVVSKKSG LLFERRLIER YIEDHGKCPA TKEDLTMDDI VPVKTNTVWF LRSTMEVIFL IRQVMKQYKE QKDRYMVFID LEKAYEKIVK
101: PRPLQAASIP GLLGIFQNEW DALMLSNFAL EQQLHTARQE LSHALYQHDA ACRVIARLKK ERDDARALLA QAERQIPASV AGAAPAAVVS NGKRVIEDEI
201: GPDGKKIRPG INPVMIDELT ECNAMLSAQR KKRQVPPTLA PIDALERYTQ ISSHPLHKTN KPGILSMDIH PSKDIVATGG IDTNAVIFDR SSGQILCTLA
301: GHSKKTVRIW QENENGNYNC VHTLKDHTDE VEAVTVHVTQ KYFVSASKDN SWCFYDISTG SCLTQVGDAS GQEGYTSASF HPDGLILGTG TTDAVVKIWD
401: VKAQSNVAKF EGHVGPVTAM SFSENGYFLA TAAHDGVKLW DLRKLRNFRT FSPYDLDTPT NTVEFDFSGN YLAIGGSDIR VYQVANVKAE WNLIKTLPDL
501: SGTGKVTSVK FGVDAKYIAI GSMDRNLRIF GLPGDDQMEE SNTAAE

Best Arabidopsis Sequence Match ( AT1G04510.1 )
(BLAST)

001: MNCAISGEVP EEPVVSKKSG LLYEKRLIQT HISDYGKCPV TGEPHTLDDI VPIKTGKIVK PKPLHTASIP GLLGTFQTEW DSLMLSNFAL EQQLHTARQE
101: LSHALYQHDA ACRVIARLKK ERDESRQLLA EAERQLPAAP EVATSNAALS NGKRGIDDGE QGPNAKKMRL GISAEVITEL TDCNAALSQQ RKKRQIPKTL
201: ASVDALEKFT QLSSHPLHKT NKPGIFSMDI LHSKDVIATG GIDTTAVLFD RPSGQILSTL TGHSKKVTSI KFVGDTDLVL TASSDKTVRI WGCSEDGNYT
301: SRHTLKDHSA EVRAVTVHAT NKYFVSASLD STWCFYDLSS GLCLAQVTDA SENDVNYTAA AFHPDGLILG TGTAQSIVKI WDVKSQANVA KFGGHNGEIT
401: SISFSENGYF LATAALDGVR LWDLRKLKNF RTFDFPDANS VEFDHSGSYL GIAASDIRVF QAASVKAEWN PIKTLPDLSG TGKATSVKFG LDSKYIAVGS
501: MDRNLRIFGL PDDDNTEDSA QDS

Arabidopsis Description

PRP19APre-mRNA-processing factor 19 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q94BR4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.