Factsheet for Zm00001d032763_P003

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG38386	Sorghum	cytosol	96.39	96.39
Zm00001d021987_P001	Maize	cytosol	10.46	94.83
TraesCS1B01G165900.2	Wheat	cytosol	90.68	90.51
HORVU1Hr1G039050.13	Barley	cytosol	90.11	89.77
TraesCS1A01G148000.1	Wheat	cytosol	90.68	89.66
TraesCS1D01G145900.2	Wheat	cytosol	90.49	89.47
Zm00001d014078_P001	Maize	cytosol	92.21	88.83
GSMUA_Achr8P12630_001	Banana	cytosol	80.42	80.42
GSMUA_Achr11P...	Banana	cytosol	79.85	79.85
Zm00001d017109_P001	Maize	cytosol	27.19	78.57
Zm00001d015939_P001	Maize	cytosol	19.58	77.44
Zm00001d011008_P001	Maize	extracellular	23.57	76.07
Zm00001d051091_P001	Maize	cytosol	12.17	60.95

Protein Annotations

EntrezGene:100284255	MapMan:16.4.5.1.4	Gene3D:2.130.10.10	Gene3D:3.30.40.10	UniProt:B6TRQ7	EMBL:BT067365
ncoils:Coil	EMBL:EU967672	GO:GO:0000398	GO:GO:0000974	GO:GO:0003674	GO:GO:0003824
GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0006139	GO:GO:0006259
GO:GO:0006281	GO:GO:0006464	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0061630	InterPro:IPR001680	InterPro:IPR003613
InterPro:IPR013083	InterPro:IPR015943	InterPro:IPR017986	ProteinID:ONM06008.1	ProteinID:ONM06009.1	ProteinID:ONM06011.1
PFAM:PF00400	PFAM:PF08606	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PFscan:PS51698
PANTHER:PTHR43995	InterPro:Pre-mRNA_splic_Prp19	InterPro:Prp19	SMART:SM00320	SMART:SM00504	SUPFAM:SSF50978
SUPFAM:SSF57850	UniParc:UPI000182DF8C	InterPro:Ubox_domain	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	EnsemblPlantsGene:Zm00001d032763	EnsemblPlants:Zm00001d032763_P003	EnsemblPlants:Zm00001d032763_T003	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

Pre-mRNA-processing factor 19 homolog 2

Coordinates

chr1:-:237624765..237636043

Molecular Weight (calculated)

57599.4 Da

IEP (calculated)

6.399

GRAVY (calculated)

-0.303

Length

526 amino acids

Sequence
(BLAST)

001: MICAISGEVP DEPVVSKKSG LLFERRLIER YIEDHGKCPI TKDELTMDDI VPVNTNKVVK PRPLQAASIP GLLGIFQNEW DALMLSNFAL EQQLHTARQE
101: LSHALYQHDA ACRVIARLKK ERDEARALLA QAERQIPASV AGAAPAAVVS NGKRAMEDEI GPDGKKIRPG INPVMIDELT ECNTMLSAQR KKRQVPPTLA
201: PLDALERYTQ ISSHPLHKTN KPGILSMDVH PSKDVVATGG IDTNAVIFDR SSGQILCTLT GHSKKITTLK FVPRDQLFVT GSADKTVRIW QENENGNYNC
301: VHTLKDHTAE VEAVTVHATQ KYFVSASKDN SWCFYDISTG SCLTQVGEAS GQEGYTSASF HPDGLILGTG TTDAVVKIWD VKTQSNVAKF EGHVGPVTAM
401: SFSENGYFLA TAAHDGVKLW DLRKLRNFRT FSPYDSDTPT NTVEFDFSGN YLAIGGSDIR VYQVANVKAE WNLIKTLPDL SGTGKVTSVK FGADAKYIAV
501: GSMDRNLRIF GLPGDDQMEE STTAAE

Best Arabidopsis Sequence Match ( AT2G33340.2 )
(BLAST)

001: MNCAISGEVP VEPVVSTKSG LLFERRLIER HISDYGKCPV TGEPLTIDDI VPIKTGEIIK PKTLHTASIP GLLGTFQNEW DGLMLSNFAL EQQLHTARQE
101: LSHALYQHDS ACRVIARLKK ERDEARQLLA EVERHIPAAP EAVTANAALS NGKRAAVDEE LGPDAKKLCP GISAEIITEL TDCNAALSQK RKKRQIPQTL
201: ASIDTLERFT QLSSHPLHKT NKPGICSMDI LHSKDVIATG GVDATAVLFD RPSGQILSTL TGHSKKVTSV KFVGDSDLVL TASADKTVRI WRNPGDGNYA
301: CGYTLNDHSA EVRAVTVHPT NKYFVSASLD GTWCFYDLSS GSCLAQVSDD SKNVDYTAAA FHPDGLILGT GTSQSVVKIW DVKSQANVAK FDGHTGEVTA
401: ISFSENGYFL ATAAEDGVRL WDLRKLRNFK SFLSADANSV EFDPSGSYLG IAASDIKVYQ TASVKAEWNL IKTLPDLSGT GKATCVKFGS DAQYVAVGSM
501: DRNLRIFGLP GDEKANVDDD SAQDS

Arabidopsis Description

PRP19BPre-mRNA-processing factor 19 homolog 2 [Source:UniProtKB/Swiss-Prot;Acc:O22785]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.