CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 1
cytosol 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY17165	Canola	cytosol	84.89	98.48
CDY23752	Canola	cytosol	81.61	94.67
CDY37731	Canola	cytosol	81.28	94.29
AT2G33340.1	Thale cress	cytosol	79.64	92.38
CDX89818	Canola	cytosol	71.76	83.72
CDY15510	Canola	plastid	71.76	79.45
CDY18239	Canola	endoplasmic reticulum, plastid	71.26	78.77
VIT_05s0049g01840.t01	Wine grape	cytosol	65.68	76.34
PGSC0003DMT400044280	Potato	cytosol	63.88	74.66
KRG90340	Soybean	nucleus	64.2	74.48
KRH33584	Soybean	nucleus	63.55	73.71
Solyc09g090660.2.1	Tomato	cytosol, nucleus	63.05	73.7
GSMUA_Achr11P...	Banana	cytosol	61.9	71.67
PGSC0003DMT400075431	Potato	cytosol	53.04	71.62
CDX86629	Canola	plastid	61.9	71.27
GSMUA_Achr8P12630_001	Banana	cytosol	60.92	70.53
KXG38386	Sorghum	cytosol	60.59	70.15
Os10t0466300-01	Rice	nucleus	60.1	69.45
TraesCS1B01G165900.2	Wheat	cytosol	59.93	69.26
HORVU1Hr1G039050.13	Barley	cytosol	59.61	68.75
TraesCS1A01G148000.1	Wheat	cytosol	59.93	68.61
TraesCS1D01G145900.2	Wheat	cytosol	59.77	68.42
TraesCS4B01G341300.1	Wheat	cytosol	58.62	68.0
TraesCS4D01G337200.1	Wheat	cytosol	58.78	67.42
TraesCS5A01G510600.1	Wheat	cytosol	58.46	67.04
HORVU4Hr1G083960.3	Barley	plastid	59.28	61.6
CDY49475	Canola	extracellular	8.87	51.43
CDY29722	Canola	mitochondrion	7.22	27.33

Protein Annotations

MapMan:16.4.5.1.4	Gene3D:2.130.10.10	Gene3D:3.30.40.10	GO:A0A078G1Y5	UniProt:A0A078G1Y5	EnsemblPlants:CDY19484
ProteinID:CDY19484	ProteinID:CDY19484.1	ncoils:Coil	GO:GO:0000398	GO:GO:0000974	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0006139
GO:GO:0006259	GO:GO:0006281	GO:GO:0006464	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0061630	EnsemblPlantsGene:GSBRNA2T00009080001
InterPro:IPR001680	InterPro:IPR003613	InterPro:IPR013083	InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400
PFAM:PF08606	PFscan:PS50082	PFscan:PS50294	PFscan:PS51698	PANTHER:PTHR43995	InterPro:Pre-mRNA_splic_Prp19
InterPro:Prp19	SMART:SM00320	SMART:SM00504	SUPFAM:SSF50978	SUPFAM:SSF57850	UniPathway:UPA00143
UniParc:UPI0004EEA885	InterPro:Ubox_domain	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf
InterPro:Znf_RING/FYVE/PHD	:	:	:	:	:

Description

BnaC04g11150DBnaC04g11150D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G1Y5]

Coordinates

chrLK032096:-:569058..574110

Molecular Weight (calculated)

65899.1 Da

IEP (calculated)

6.941

GRAVY (calculated)

-0.226

Length

609 amino acids

Sequence
(BLAST)

001: MNSNKKLQIL NLSPSPRKID PLNYLPLRVC SPLSLSLSTN FPASAILISS AGPEKIKPYL RRSKGLPLHP NYSRVVVFSS LFPTMNCAIS GEVPEVPVVS
101: TKSGLLFEKR LIESHISDYG KCPVTGEPLT IDDIVPIKSG KVIKPKLLHT ASIPGLLGTF QNEWDGLMLS NFALEQQLHT ARQELSHALY QHDSACRVIA
201: RLKKERDEAR QLLAEVERHI PAAPEAVTAN APLSNGKRAA DDEETGPDAK KLCPGISADI ITELTDCNAA LSQKRKKRQI PETLASVDAL GRFTQLSSHP
301: LHKTNKPGIC SMDILHSKDV IATGGIDATA VIFDRPSGQI LSTLTGHSKK VTSVKFVGDS DLVLTASADK TVRVWRDSGD GQYACGHTLN DHSEEVRAVT
401: VHATNKYFVS ASLDSTWCFY DLSSGLCLAK VADDSEKVDY TAAAFHPDGL ILGTGTSQSV VKIWDVKSQA NVARFDGHTG EVTSISFSEN GYFLATAAED
501: GVKLWDLRKL RNFRSFSSAD ANSVEFDPSG SYLGIAASDI RLYQTASVKA EWNLIKTLPD LSGTGKATCV KFGPDAQYVA VGSMDRNLRI FGLPGDEKAN
601: ADDDSAQDS

Best Arabidopsis Sequence Match ( AT2G33340.2 )
(BLAST)

001: MNCAISGEVP VEPVVSTKSG LLFERRLIER HISDYGKCPV TGEPLTIDDI VPIKTGEIIK PKTLHTASIP GLLGTFQNEW DGLMLSNFAL EQQLHTARQE
101: LSHALYQHDS ACRVIARLKK ERDEARQLLA EVERHIPAAP EAVTANAALS NGKRAAVDEE LGPDAKKLCP GISAEIITEL TDCNAALSQK RKKRQIPQTL
201: ASIDTLERFT QLSSHPLHKT NKPGICSMDI LHSKDVIATG GVDATAVLFD RPSGQILSTL TGHSKKVTSV KFVGDSDLVL TASADKTVRI WRNPGDGNYA
301: CGYTLNDHSA EVRAVTVHPT NKYFVSASLD GTWCFYDLSS GSCLAQVSDD SKNVDYTAAA FHPDGLILGT GTSQSVVKIW DVKSQANVAK FDGHTGEVTA
401: ISFSENGYFL ATAAEDGVRL WDLRKLRNFK SFLSADANSV EFDPSGSYLG IAASDIKVYQ TASVKAEWNL IKTLPDLSGT GKATCVKFGS DAQYVAVGSM
501: DRNLRIFGLP GDEKANVDDD SAQDS

Arabidopsis Description

PRP19BPre-mRNA-processing factor 19 homolog 2 [Source:UniProtKB/Swiss-Prot;Acc:O22785]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.