CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plastid

Predictor Summary:

nucleus 1
mitochondrion 1
endoplasmic reticulum 3
extracellular 2
vacuole 2
plasma membrane 2
golgi 2
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plastid
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX93482
CDX94951
CDY20673
CDY31065
CDY47227
CDY53058

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G04510.1	CDX93482	AT1G09770.1	19629177
AT1G04510.1	CDX94951	AT1G09770.1	19629177
AT1G04510.1	CDY20673	AT1G09770.1	19629177
AT1G04510.1	CDY31065	AT1G09770.1	19629177
AT1G04510.1	CDY47227	AT1G09770.1	19629177
AT1G04510.1	CDY53058	AT1G09770.1	19629177

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89818	Canola	cytosol	92.56	97.7
AT1G04510.1	Thale cress	cytosol	85.84	90.44
CDY15510	Canola	plastid	90.02	90.18
CDY23752	Canola	cytosol	78.4	82.29
CDY37731	Canola	cytosol	78.22	82.1
CDY17165	Canola	cytosol	78.04	81.9
CDX86629	Canola	plastid	76.77	79.96
VIT_05s0049g01840.t01	Wine grape	cytosol	69.51	73.09
PGSC0003DMT400044280	Potato	cytosol	68.78	72.74
KRG90340	Soybean	nucleus	68.78	72.19
Solyc09g090660.2.1	Tomato	cytosol, nucleus	68.24	72.17
CDY19484	Canola	plastid	78.77	71.26
KRH33584	Soybean	nucleus	67.7	71.05
GSMUA_Achr11P...	Banana	cytosol	67.33	70.53
KXG38386	Sorghum	cytosol	66.79	69.96
PGSC0003DMT400075431	Potato	cytosol	57.17	69.84
Os10t0466300-01	Rice	nucleus	66.42	69.45
GSMUA_Achr8P12630_001	Banana	cytosol	65.88	69.01
TraesCS1B01G165900.2	Wheat	cytosol	65.88	68.88
HORVU1Hr1G039050.13	Barley	cytosol	65.88	68.75
TraesCS1A01G148000.1	Wheat	cytosol	65.88	68.23
TraesCS1D01G145900.2	Wheat	cytosol	65.7	68.05
TraesCS4B01G341300.1	Wheat	cytosol	64.25	67.43
TraesCS4D01G337200.1	Wheat	cytosol	64.43	66.86
TraesCS5A01G510600.1	Wheat	cytosol	64.07	66.48
HORVU4Hr1G083960.3	Barley	plastid	63.7	59.9
CDY49475	Canola	extracellular	11.25	59.05
CDY29722	Canola	mitochondrion	7.8	26.71

Protein Annotations

MapMan:16.4.5.1.4	Gene3D:2.130.10.10	Gene3D:3.30.40.10	GO:A0A078FYJ7	UniProt:A0A078FYJ7	EnsemblPlants:CDY18239
ProteinID:CDY18239	ProteinID:CDY18239.1	ncoils:Coil	GO:GO:0000398	GO:GO:0000974	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0006139
GO:GO:0006259	GO:GO:0006281	GO:GO:0006464	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0061630	EnsemblPlantsGene:GSBRNA2T00002769001
InterPro:IPR001680	InterPro:IPR003613	InterPro:IPR013083	InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400
PFAM:PF08606	PFscan:PS50082	PFscan:PS50294	PFscan:PS51698	PANTHER:PTHR43995	InterPro:Pre-mRNA_splic_Prp19
InterPro:Prp19	SMART:SM00320	SMART:SM00504	SUPFAM:SSF50978	SUPFAM:SSF57850	UniPathway:UPA00143
UniParc:UPI0004EDD238	InterPro:Ubox_domain	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

BnaC05g02620DBnaC05g02620D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FYJ7]

Coordinates

chrLK032083:+:470216..474689

Molecular Weight (calculated)

59697.5 Da

IEP (calculated)

7.005

GRAVY (calculated)

-0.233

Length

551 amino acids

Sequence
(BLAST)

001: MNCASKTSLS HSSRFANLGF YICYLHRGLF LCAVSGEVPV EPVVSKKSGL LYEKRLIETH ISDFGKCPVT GEPHTIDDIV AVKTGKIVKP KPLHTASIPG
101: LLGTFQTEWD GLMLSNFSLE QQLHTARQEL SHALYQHDAA CRVIARLKKE GDEARQLLSE AERQLPAAPA VATENATLSN GKRAADGDDQ GPDAKKMRLG
201: ISGEVITELT DCNAALSQQR KKRQIPPTLA SVDALEKFTQ LSSHPLHKTS KPGIFSMDIL HSKDVIATGG IDTTAVLFDR PSGQILSTLT GHSKKVTSIK
301: FVGDTDLVLT ASSDKTVRIW GSSEDGSYAC RHTLKDHSAE VRAVTVHATN KYFVSASLDS TWCFYDMSSG LCLAQVTDDS EKVDYTAAAF HPDGLILGTG
401: TAQSIVKIWD VKSQANVAKF GGHTGEITSV SFSENGYFLA TSALDGVRLW DLRKLKNFRT FEFPNANSVE FDHSGSYLGI AASDIRVFQT ASVKAEWNPV
501: KTLPDLSGTG RATCVKFGPD AKYVAVGSMD RNLRIFGLPS NDSTEDSAQD S

Best Arabidopsis Sequence Match ( AT1G04510.1 )
(BLAST)

001: MNCAISGEVP EEPVVSKKSG LLYEKRLIQT HISDYGKCPV TGEPHTLDDI VPIKTGKIVK PKPLHTASIP GLLGTFQTEW DSLMLSNFAL EQQLHTARQE
101: LSHALYQHDA ACRVIARLKK ERDESRQLLA EAERQLPAAP EVATSNAALS NGKRGIDDGE QGPNAKKMRL GISAEVITEL TDCNAALSQQ RKKRQIPKTL
201: ASVDALEKFT QLSSHPLHKT NKPGIFSMDI LHSKDVIATG GIDTTAVLFD RPSGQILSTL TGHSKKVTSI KFVGDTDLVL TASSDKTVRI WGCSEDGNYT
301: SRHTLKDHSA EVRAVTVHAT NKYFVSASLD STWCFYDLSS GLCLAQVTDA SENDVNYTAA AFHPDGLILG TGTAQSIVKI WDVKSQANVA KFGGHNGEIT
401: SISFSENGYF LATAALDGVR LWDLRKLKNF RTFDFPDANS VEFDHSGSYL GIAASDIRVF QAASVKAEWN PIKTLPDLSG TGKATSVKFG LDSKYIAVGS
501: MDRNLRIFGL PDDDNTEDSA QDS

Arabidopsis Description

PRP19APre-mRNA-processing factor 19 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q94BR4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.