Factsheet for Os10t0466300-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 19621931
nucleus: 23777608
nucleus: 24133045
golgi: 25047511
nucleus: 26035336

msms PMID: 24133045 doi

DK Jaiswal, D Ray, MK Choudhary, P Subba, A Kumar, J Verma, R Kumar, A Datta, S Chakraborty, N Chakraborty

National Institute of Plant Genome Research, New Delhi, India.

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

msms PMID: 26035336 doi

M Li, X Yin, K Sakata, P Yang, S Komatsu

§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

msms PMID: 25047511 doi

Y Nie, F Huang, S Dong, L Li, P Gao, H Zhao, Y Wang, S Han

Beijing Key Laboratory of Gene Resource and Molecular Development, Beijing Normal University, College of Life Sciences, Beijing, P. R. China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os04t0348300-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G04510.1	Os04t0348300-01	AT1G09770.1	19629177

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G341300.1	Wheat	cytosol	82.92	83.24
TraesCS5A01G510600.1	Wheat	cytosol	82.92	82.3
TraesCS4D01G337200.1	Wheat	cytosol	82.92	82.3
GSMUA_Achr8P12630_001	Banana	cytosol	79.89	80.04
GSMUA_Achr11P...	Banana	cytosol	79.7	79.85
VIT_05s0049g01840.t01	Wine grape	cytosol	74.95	75.38
Solyc09g090660.2.1	Tomato	cytosol, nucleus	72.87	73.7
KRG90340	Soybean	nucleus	73.06	73.33
PGSC0003DMT400044280	Potato	cytosol	72.49	73.32
HORVU4Hr1G083960.3	Barley	plastid	81.4	73.21
KRH33584	Soybean	nucleus	72.68	72.95
Bra015322.1-P	Field mustard	cytosol	70.21	70.88
CDX89818	Canola	cytosol	70.21	70.88
CDY37731	Canola	cytosol	70.02	70.29
AT2G33340.1	Thale cress	cytosol	70.02	70.29
AT1G04510.1	Thale cress	cytosol	69.64	70.17
CDY23752	Canola	cytosol	69.83	70.1
CDY17165	Canola	cytosol	69.83	70.1
Bra005504.1-P	Field mustard	cytosol	69.83	70.1
PGSC0003DMT400075431	Potato	cytosol	59.77	69.84
Bra021844.1-P	Field mustard	nucleus	58.44	69.68
CDY15510	Canola	plastid	70.21	67.27
CDY18239	Canola	endoplasmic reticulum, plastid	69.45	66.42
CDY19484	Canola	plastid	69.45	60.1
Bra030575.1-P	Field mustard	cytosol	65.09	59.76
CDX86629	Canola	plastid	59.58	59.36
CDY49475	Canola	extracellular	8.92	44.76
CDY29722	Canola	mitochondrion	7.4	24.22

Protein Annotations

MapMan:16.4.5.1.4	Gene3D:2.130.10.10	Gene3D:3.30.40.10	EntrezGene:4348844	ProteinID:AAK27816.1	ProteinID:AAP54192.1
ProteinID:ABG66129.1	EMBL:AK064778	ProteinID:BAF26718.1	ProteinID:BAT11216.1	ncoils:Coil	ProteinID:EEE51104.1
GO:GO:0000349	GO:GO:0000398	GO:GO:0000974	GO:GO:0002376	GO:GO:0003674	GO:GO:0003824
GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005681	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006397
GO:GO:0006464	GO:GO:0006950	GO:GO:0006952	GO:GO:0006974	GO:GO:0008150	GO:GO:0008152
GO:GO:0008380	GO:GO:0009987	GO:GO:0016043	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
GO:GO:0045087	GO:GO:0061630	GO:GO:0070534	GO:GO:0071006	InterPro:IPR001680	InterPro:IPR003613
InterPro:IPR013083	InterPro:IPR015943	InterPro:IPR017986	EnsemblPlantsGene:Os10g0466300	EnsemblPlants:Os10t0466300-01	PFAM:PF00400
PFAM:PF08606	PFscan:PS50082	PFscan:PS50294	PFscan:PS51698	PANTHER:PTHR43995	InterPro:Pre-mRNA_splic_Prp19
InterPro:Prp19	UniProt:Q9AV81	SMART:SM00320	SMART:SM00504	SUPFAM:SSF50978	SUPFAM:SSF57850
UniParc:UPI00000A98DC	InterPro:Ubox_domain	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf
RefSeq:XP_015614850.1	InterPro:Znf_RING/FYVE/PHD	:	:	:	:

Description

plant U-box-containing protein 72, U-box protein 72Similar to Yarrowia lipolytica chromosome C of strain CLIB99 of Yarrowia lipolytica. (Os10t0466300-01);Similar to Yarrowia lipolytica chromosome C of strain CLIB99 of Yarrowia lipolytica. (Os10t0466300-02)

Coordinates

chr10:-:17203587..17210619

Molecular Weight (calculated)

57819.6 Da

IEP (calculated)

6.353

GRAVY (calculated)

-0.332

Length

527 amino acids

Sequence
(BLAST)

001: MICAISGEVP DEPVVSKKSG LLFERRLVER YIEDHGKCPV TKEELTMDDI VAVKTNKVVK PRQLQAASIP GLLGMFQNEW DAIMLSSFAL EQQLHTARQE
101: LSHALYQHDA ACRVIARLKK ERDEARALLA QAERQIPASM AGAAPTAVVS NGKRAFEDEV GPDGKKIRPG INPVMIDELT ECNTMLSAHR KKRQVPPTLA
201: SIDAIERYTQ ISSHPLHKTN KPGILSMDIH PSKDIIATGG IDTNAVLFDR PSGQILCTLT GHSKKITSLK FVPRDELFVT GSADKTVKIW QGSEEGNYNC
301: IHTLKDHTAE VEAVTVHATQ KYFVTASKDN TWCFYDIPSG SCLTQVGESS GQEGYTSASF HPDGLILGTG TTEAVVKIWD VKTQSNVAKF EGHVGPVTAM
401: SFSENGYFLA TAALDGVKLW DLRKLRNFRT ISPYDSDTPT NSVEFDFSGS YLAVGGSDTR VYQVANVKLE WNLVKTLPDL SGTGKVTNVK FGTDAKYIAV
501: GSMDRNLRIF GHPGEDDQMD DAKPSEE

Best Arabidopsis Sequence Match ( AT2G33340.2 )
(BLAST)

001: MNCAISGEVP VEPVVSTKSG LLFERRLIER HISDYGKCPV TGEPLTIDDI VPIKTGEIIK PKTLHTASIP GLLGTFQNEW DGLMLSNFAL EQQLHTARQE
101: LSHALYQHDS ACRVIARLKK ERDEARQLLA EVERHIPAAP EAVTANAALS NGKRAAVDEE LGPDAKKLCP GISAEIITEL TDCNAALSQK RKKRQIPQTL
201: ASIDTLERFT QLSSHPLHKT NKPGICSMDI LHSKDVIATG GVDATAVLFD RPSGQILSTL TGHSKKVTSV KFVGDSDLVL TASADKTVRI WRNPGDGNYA
301: CGYTLNDHSA EVRAVTVHPT NKYFVSASLD GTWCFYDLSS GSCLAQVSDD SKNVDYTAAA FHPDGLILGT GTSQSVVKIW DVKSQANVAK FDGHTGEVTA
401: ISFSENGYFL ATAAEDGVRL WDLRKLRNFK SFLSADANSV EFDPSGSYLG IAASDIKVYQ TASVKAEWNL IKTLPDLSGT GKATCVKFGS DAQYVAVGSM
501: DRNLRIFGLP GDEKANVDDD SAQDS

Arabidopsis Description

PRP19BPre-mRNA-processing factor 19 homolog 2 [Source:UniProtKB/Swiss-Prot;Acc:O22785]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.