Factsheet for Bra021844.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY37731	Canola	cytosol	99.55	83.81
Bra005504.1-P	Field mustard	cytosol	95.7	80.57
AT2G33340.1	Thale cress	cytosol	94.57	79.62
Bra015322.1-P	Field mustard	cytosol	83.03	70.31
Zm00001d021987_P001	Maize	cytosol	8.82	67.24
VIT_05s0049g01840.t01	Wine grape	cytosol	75.57	63.74
PGSC0003DMT400075431	Potato	cytosol	63.35	62.08
KRG90340	Soybean	nucleus	73.08	61.52
PGSC0003DMT400044280	Potato	cytosol	72.4	61.42
Solyc09g090660.2.1	Tomato	cytosol, nucleus	71.95	61.04
KRH33584	Soybean	nucleus	72.17	60.76
Bra030575.1-P	Field mustard	cytosol	78.51	60.45
GSMUA_Achr11P...	Banana	cytosol	70.59	59.32
TraesCS1B01G165900.2	Wheat	cytosol	69.91	58.63
GSMUA_Achr8P12630_001	Banana	cytosol	69.68	58.56
Os10t0466300-01	Rice	nucleus	69.68	58.44
HORVU1Hr1G039050.13	Barley	cytosol	69.68	58.33
KXG38386	Sorghum	cytosol	69.23	58.17
TraesCS1A01G148000.1	Wheat	cytosol	69.91	58.08
TraesCS1D01G145900.2	Wheat	cytosol	69.68	57.89
TraesCS4B01G341300.1	Wheat	cytosol	67.87	57.14
TraesCS4D01G337200.1	Wheat	cytosol	68.1	56.69
TraesCS5A01G510600.1	Wheat	cytosol	67.87	56.5
HORVU4Hr1G083960.3	Barley	plastid	68.33	51.54

Protein Annotations

MapMan:16.4.5.1.4	Gene3D:2.130.10.10	EnsemblPlantsGene:Bra021844	EnsemblPlants:Bra021844.1	EnsemblPlants:Bra021844.1-P	ncoils:Coil
GO:GO:0000398	GO:GO:0000974	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006464	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
GO:GO:0061630	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:M4DZ97	PFAM:PF00400
PFAM:PF08606	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR43995	InterPro:Pre-mRNA_splic_Prp19	InterPro:Prp19
SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI00025452DD	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:	:

Description

AT2G33340 (E=3e-236) | nucleotide binding / ubiquitin-protein ligase

Coordinates

chrA04:-:14825482..14828790

Molecular Weight (calculated)

47801.0 Da

IEP (calculated)

6.195

GRAVY (calculated)

-0.275

Length

442 amino acids

Sequence
(BLAST)

001: MLSNFALEQQ LHTARQELSH ALYQHDSACR VIARLKKERD EARQLLAEVE RHIPAAPEAV TANAALSNGK RAAGDEEMAP DAKKLCPGIS AEIITELTDC
101: NAALSQKRKK RQIPETLASI DSLERFTQLS SHPLHKTNKP GICSMDILHS KDVIATGGVD ATAVIFDRPS GQILSTLTGH SKKVTSVKFV GDSDLVLTAS
201: ADKTVRIWRD SGDRNYACGH TLNDHSAEVR AVTVHATNKY FVSASLDSTW CFYDLSSGLC LAKVSDDSEK VDYTAAAFHP DGLILGTGTS QSVVKIWDVK
301: SQANVAKFDG HTGEVTSISF SENGYFLATA AEDGVRLWDL RKLRNFKSFL SADANSVEFD PSGSYLGVAA SDIRLYQTAS VKAEWNLIKT LPDLSGTGKA
401: TCVKFGPDAQ YVAVGSMDRN LRIFGLPGDQ IANADDDSAQ DS

Best Arabidopsis Sequence Match ( AT2G33340.2 )
(BLAST)

001: MNCAISGEVP VEPVVSTKSG LLFERRLIER HISDYGKCPV TGEPLTIDDI VPIKTGEIIK PKTLHTASIP GLLGTFQNEW DGLMLSNFAL EQQLHTARQE
101: LSHALYQHDS ACRVIARLKK ERDEARQLLA EVERHIPAAP EAVTANAALS NGKRAAVDEE LGPDAKKLCP GISAEIITEL TDCNAALSQK RKKRQIPQTL
201: ASIDTLERFT QLSSHPLHKT NKPGICSMDI LHSKDVIATG GVDATAVLFD RPSGQILSTL TGHSKKVTSV KFVGDSDLVL TASADKTVRI WRNPGDGNYA
301: CGYTLNDHSA EVRAVTVHPT NKYFVSASLD GTWCFYDLSS GSCLAQVSDD SKNVDYTAAA FHPDGLILGT GTSQSVVKIW DVKSQANVAK FDGHTGEVTA
401: ISFSENGYFL ATAAEDGVRL WDLRKLRNFK SFLSADANSV EFDPSGSYLG IAASDIKVYQ TASVKAEWNL IKTLPDLSGT GKATCVKFGS DAQYVAVGSM
501: DRNLRIFGLP GDEKANVDDD SAQDS

Arabidopsis Description

PRP19BPre-mRNA-processing factor 19 homolog 2 [Source:UniProtKB/Swiss-Prot;Acc:O22785]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.