Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
21132161
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH60495 | Soybean | endoplasmic reticulum, nucleus | 92.86 | 92.49 |
| VIT_17s0000g02840.t01 | Wine grape | cytosol, mitochondrion, nucleus | 58.73 | 71.5 |
| PGSC0003DMT400014424 | Potato | nucleus | 65.48 | 65.74 |
| Solyc03g119010.2.1 | Tomato | nucleus | 62.3 | 65.42 |
| GSMUA_Achr3P18370_001 | Banana | cytosol | 35.32 | 62.24 |
| AT3G18165.1 | Thale cress | cytosol | 60.71 | 60.47 |
| CDY24603 | Canola | cytosol | 21.03 | 60.23 |
| CDY24431 | Canola | nucleus | 59.92 | 59.68 |
| Bra022288.1-P | Field mustard | nucleus | 59.52 | 59.29 |
| CDX92209 | Canola | nucleus | 59.52 | 59.29 |
| CDX95551 | Canola | cytosol | 58.33 | 58.1 |
| EES00531 | Sorghum | cytosol | 57.94 | 57.48 |
| Bra021297.1-P | Field mustard | cytosol | 57.54 | 57.31 |
| TraesCS3D01G186100.1 | Wheat | cytosol | 56.35 | 55.47 |
| TraesCS3A01G181200.1 | Wheat | nucleus | 55.95 | 55.08 |
| TraesCS3B01G211300.1 | Wheat | cytosol | 55.95 | 55.08 |
| HORVU3Hr1G037080.1 | Barley | plastid | 56.35 | 47.65 |
| Zm00001d040357_P001 | Maize | cytosol | 57.94 | 40.44 |
| GSMUA_Achr3P18380_001 | Banana | cytosol | 29.76 | 37.13 |
| CDY18500 | Canola | cytosol | 57.54 | 24.21 |
Protein Annotations
| EntrezGene:100777152 | MapMan:16.4.5.1.1 | EMBL:ACUP02004781 | ncoils:Coil | EnsemblPlantsGene:GLYMA_08G051400 | GO:GO:0000974 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006397 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0071011 | GO:GO:0071013 | UniProt:I1KQH7 |
| EnsemblPlants:KRH41788 | ProteinID:KRH41788 | ProteinID:KRH41788.1 | PFAM:PF05700 | PANTHER:PTHR13296 | InterPro:SPF27 |
| UniParc:UPI00023C59C1 | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr8:-:4002778..4004517
Molecular Weight (calculated)
29404.7 Da
IEP (calculated)
5.003
GRAVY (calculated)
-0.902
Length
252 amino acids
Sequence
(BLAST)
(BLAST)
001: MADGSSGEIL MLEAPASYGR SSDSDAEIID ALPYIDDDYA DPRVKLEVDR LVEDEMRRST KKPTDFLNDF PPLPNSIFQN YPMIAREYER VRAGRPPVAL
101: DRSRYDLEMP PPNKRNDETA WKQALHRAQR LLQYQIIRME NLDLMLKYGP DTWKQHNQRL EVYLSRMQKL AQEQNEKIEK VNRERKYHQQ NTAYELNALS
201: MQWKELCQKN IDISAACASV ENRINELKRE AAERGWNLGA VTENDQLANS EL
101: DRSRYDLEMP PPNKRNDETA WKQALHRAQR LLQYQIIRME NLDLMLKYGP DTWKQHNQRL EVYLSRMQKL AQEQNEKIEK VNRERKYHQQ NTAYELNALS
201: MQWKELCQKN IDISAACASV ENRINELKRE AAERGWNLGA VTENDQLANS EL
001: MATNNGDVLM LEATPEAARP WASAANAEVI DALPYIDDDY GNPLIKSEVD RLVEEEMRRS SKKPADFLKD LPPLPKFDFK NCPVLGKEYE RVRAGKPPVR
101: IDFESRYKLE MPPANKRNDD AAWKQYLQKN QRSLQQKLIE LENLELMSKL GPELWRQNNH RLEVFLTRMQ RLAQEQNEEI EKVNRERKYH QQTTSYELNA
201: LSQEWRQLCV KNMEIQSACA MLETQIDSFK KEAAERGWNL EEKLENVEPL QMQ
101: IDFESRYKLE MPPANKRNDD AAWKQYLQKN QRSLQQKLIE LENLELMSKL GPELWRQNNH RLEVFLTRMQ RLAQEQNEEI EKVNRERKYH QQTTSYELNA
201: LSQEWRQLCV KNMEIQSACA MLETQIDSFK KEAAERGWNL EEKLENVEPL QMQ
Arabidopsis Description
MOS4Pre-mRNA-splicing factor SPF27 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q949S9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.