CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1
cytosol 3
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218
nucleus: 27291164
endoplasmic reticulum: 28499913
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH40912	Soybean	nucleus	93.5	93.38
VIT_08s0056g01110.t01	Wine grape	cytosol	80.38	78.93
VIT_13s0019g00880.t01	Wine grape	cytosol	80.31	78.87
KRH65589	Soybean	cytosol	9.12	78.53
CDX74890	Canola	cytosol	72.18	78.4
Bra005086.1-P	Field mustard	cytosol	76.38	77.55
CDX91488	Canola	cytosol	76.25	77.52
CDX93302	Canola	peroxisome	71.19	77.39
AT2G38770.1	Thale cress	cytosol	75.92	76.67
Solyc01g068480.2.1	Tomato	nucleus	75.92	72.86
GSMUA_Achr6P10420_001	Banana	endoplasmic reticulum, plasma membrane	41.73	72.6
Bra017100.1-P	Field mustard	cytosol	49.15	72.37
OQU92496	Sorghum	cytosol	69.95	70.46
TraesCS4A01G149500.1	Wheat	cytosol, nucleus	71.52	69.52
TraesCS4D01G155600.1	Wheat	cytosol	71.39	69.43
HORVU4Hr1G035890.1	Barley	cytosol	71.98	69.04
GSMUA_Achr6P10430_001	Banana	cytosol	19.55	66.67
Os03t0387000-01	Rice	cytosol, extracellular	26.18	66.5
Zm00001d029375_P002	Maize	cytosol	72.97	66.15
TraesCSU01G068900.2	Wheat	cytosol	18.5	60.65
KRG98587	Soybean	cytosol	6.76	58.52
CDX97748	Canola	cytosol	4.92	40.32

Protein Annotations

EntrezGene:100778665	MapMan:16.4.5.2.3	Gene3D:3.40.50.300	EMBL:ACUP02012184	InterPro:Aquarius_N	InterPro:CWF11_fam
EnsemblPlantsGene:GLYMA_20G000700	GO:GO:0000398	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005681	GO:GO:0006139	GO:GO:0006397	GO:GO:0008150	GO:GO:0008152	GO:GO:0008380
GO:GO:0009987	UniProt:I1NCV6	EnsemblPlants:KRG89095	ProteinID:KRG89095	ProteinID:KRG89095.1	InterPro:P-loop_NTPase
PFAM:PF13086	PFAM:PF13087	PFAM:PF16399	PIRSF:PIRSF038901	PANTHER:PTHR10887	PANTHER:PTHR10887:SF5
SUPFAM:SSF52540	UniParc:UPI000233EEC7	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr20:+:61902..71677

Molecular Weight (calculated)

174485.0 Da

IEP (calculated)

5.780

GRAVY (calculated)

-0.340

Length

1524 amino acids

Sequence
(BLAST)

0001: MTKVYGTGLY DFRRHRVAEY PVAAAPAESK TLVPKTGGGG GGVPSSITLS EIQRDRLTKI AEANWLKSGD AGRPKKDFDP ELVRKIYETE LLVKEGSKPV
0101: PLQRVMILEV SQYLENYLWP YFDPLTATFE HVMSIIIMVN EKFRENVAAW TCFHERKDAF KGFLESVLRL KEGRELSIAE KTNYLVFMIN AFQSLEDEVV
0201: SRTILRLANL KSWYSLSYGR FQMELCLNPG LIKKWKRMIK KEPVKGDGSH LDPSTTVEVM FVRNLIEEFL EILDSQVFPL KQLSGEDDEL IDATGLGLVN
0301: DACVLYCERF MEFLIDLLSQ LPTRRYLRPL VADVAVVAKC HLSALYRHEK GKLFAQLVDL LQFYEGFEIN DHTGTQLTDH EVLESHYSRM QSFQLLAFKK
0401: MEKLRELALT NIGSIHKRAN LSKKLSVLSP EELRDFVCCK LKLVSKEDPW SERVDFLIEV MVSYFEKQQS QKEAINALPL YPNEQIMWDE SVVPSINYSG
0501: EGCLALPKLN LQFLTLHDYL LRNFNLFRLE STYEIREDIQ EAVPHLLAYI NNDGGTAFRG WSRMGVPIKE FKITEVKQPN IGEVKPSSVT AEVTYSVSSY
0601: RAHIRSEWDA LKEHDVLFLL SIRPSFEPLS TEEEDKASVP QKLGLQFVRG CEVIEIRDEE GNLMNDFSGK IKRDEWKPPK GELRTVTVAL DTAQYHMDVS
0701: NIAEKGAEDV YGTFNVLMRR KPKENNFKAI LESIRDLMNE YCIVPKWLEN IFLGYGDPSA AQWTNMPDLL ETVDFKDTFV DADHLKESFL DYEVSFVNPD
0801: GSGNLNPRPP FKIKLPRTLK PNNGALTGHA ISTSGATNEI NVVDANYQKE ALIIETYTPP DPGPYPQDQP KQNSVRFTPT QVEAIISGIQ PGLTMVVGPP
0901: GTGKTDTAVQ ILNVLYHNCP SQRTLIITHS NQALNDLFEK IMQRDVPARY LLRLGQGEQE LATDLDFSRQ GRVNAMLVRR LELLSEVERL ARSLQLPEDV
1001: GYTCETAGYF WLLHVYSRWE QFLAACAENK EKSTFVRDRF PFKEFFCDTP HPVFTGESFE KDMRAAMGCF RHLKTMFQEL EECRAFELLK STADRANYLM
1101: TKQAKIVAMT CTHAALKRKD FLQLGFKYDN LLMEESAQIL EIETFIPMLL QRQEDGHARL KRCILIGDHH QLPPVVKNMA FQKYSHMDQS LFTRFVRLGI
1201: PYIELNAQGR ARPTIAKLYN WRYRDLGDLP SVKEEVIFNR ANAGFAYDYQ LVDVPDYLGK GETTPSPWFY QNEGEAEYVV SVYIYMRLLG YPANKISILT
1301: TYNGQKLLIR DVINRRCVPY DFIGPPSKVT TVDKFQGQQN DFILLSLVRT RFVGHLRDVR RLVVAMSRAR LGLYVFCRRS LFEQCYELQP TFQLLLKRPD
1401: HLALNVNEIT SYTERNVEDP GPGHHLHLVS GIEEMGSIID RLYQEKLRHQ FDQNGAYFSH LEPSANTDWV QSGQQTMDTD MPEQTEEATT VDNHVAVDMP
1501: PENSMEDVTM VDNGDGVANG NPSP

Best Arabidopsis Sequence Match ( AT2G38770.1 )
(BLAST)

0001: MTKVYGTGTY DFKRHRVAEY PLELPSHPAE KPLESKPGSN LPSSITLSEI QQDRLTKIAE ESWIKTGGKL PEKPFDPEVV KEIYVTELKV TSGRKPVPLQ
0101: RVMILEVSQY LENYLWPNFD PETATFEHVM SMILMINEKF RENVAAWICF HDRDDLFKKF LQKVLRLKEG RDLTIAEKTN YLVFMINAFQ SLEDAVVNEI
0201: VLSLAGLQSW HSLSYGRFQM ELCLQPDLIK KWKRSSKKWA AEAKSKGEKF DLSSSPEANF VRGLIEEFVE VLDHGVFADE VDDTAGSQLV DDSSVLYCER
0301: FMEFLIDMLN QLPTRRYLRP LVADIAVVAK CRLSALYKHE KGKLFAQLVD LLQFYEKFEI KDHDGTQLTD DEALQFHYDR FMAFQLLAFK KIPKLQDLSL
0401: ANIGSIHKSS DLRRRLSVLS LEDLRDVVCS KLKLVSRHDP WADSKDFLTE VVVSSFEKQQ SQKEAINALP LYPNEQIMWD ESVIPSINYS GEGCLALPKL
0501: NLQFLTLHDY LLRNFNLFRL ESTYEIREDI QEAVPHLLAH INNEGDTAFR GWSRMAVPIN DFKIAQVKQP NIGEEKPSSV TAEVTFSIKS YRTQIRSEWN
0601: SLKEHDVLFL LCIRPSFEPL GPEEADKATV PQRLGLQYVR GCEIIDIRDE EGNLMNDFTG RVKRDEWKPP KGEMRTVTVA LDAAQYHIDV TDIAEKGAED
0701: VYGTFNVLMR RKPKENNFKA ILESIRDLMN EYCIVPEWLH NVFLGYGNPS AAQWPNMPNL LEIVDFKDTF LNANHLSESF SDYEVSFINA EGAEALDPSP
0801: PFRITLPKTL KGNGAISGNK ISEVNPADNV NMVDASPKEK LIVEAYTPPD PGPYPQDQPK QNSVKFTPTQ VGAIISGIQP GLTMVVGPPG TGKTDTAVQI
0901: LNVLYHNCPS QRTLIITHSN QALNDLFEKI MERDVPARYL LRLGQGEQEL ATDLDFSRQG RVNAMLVRRL ELLSEVERLA RSLQLPEDVG YTCETAGYFW
1001: LLHVYSRWEL FLAACAGNED NQSFVRDRFP FKDFFSDTPK PVFNGESFEK DMRAAKGCFS HLKTVFQELE ECRAFELLKS TADRANYLMT KQAKIVAMTC
1101: THAALKRRDF LQLGFKYDNL LMEESAQILE IETFIPMLLQ RQEDGHARLK RCILIGDHHQ LPPVVKNMAF QKYSHMDQSL FTRFVRLGIP YIELNAQGRA
1201: RPSLAKLYNW RYRDLGDLSI VKEAPIFQRA NAGFSYEYQL VNVPDYEGRG ESTPSPWFYQ NQGEAEYIVS VYIYMRLLGY PANKISILTT YNGQKLLIRD
1301: VINRRCVPYP FIGPPSKVTT VDKFQGQQND FILLSLVRTR FVGHLRDVRR LVVAMSRARL GLYVFCRRSL FEQCYELQPT FQLLLQRPDR LGLNFNENTA
1401: YTDRVVEEVE NSYLVHDVEE MAHIVDDRMN KFYQAQGAYE QYQNNMAQME DGNHDMESDS VVDGDESEKN MQQLNQSPDI DGELSKEVVG MEVDNNGFSS
1501: ENGKADEKN

Arabidopsis Description

EMB2765P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8L5Y4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.