CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
vacuole 1
cytosol 2
golgi 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d041716_P002	Maize	cytosol	95.11	92.11
Os06t0168500-01	Rice	plasma membrane	86.32	86.89
TraesCS5A01G096800.1	Wheat	cytosol	80.46	80.72
TraesCS5B01G102700.1	Wheat	cytosol	80.13	80.39
TraesCS5D01G109500.1	Wheat	cytosol	79.48	79.74
HORVU5Hr1G026120.1	Barley	cytosol	78.83	79.08
Solyc01g056810.2.1	Tomato	cytosol	53.75	65.22
VIT_08s0032g00440.t01	Wine grape	cytosol	63.84	63.84
Bra005968.1-P	Field mustard	cytosol	61.24	61.84
Bra009318.1-P	Field mustard	cytosol	60.26	61.06
KRH08507	Soybean	cytosol	61.24	61.04
Solyc10g081580.1.1	Tomato	cytosol, plastid	61.56	60.97
PGSC0003DMT400072284	Potato	cytosol	61.56	60.97
EER98026	Sorghum	cytosol	59.93	60.73
GSMUA_Achr2P17410_001	Banana	cytosol	57.98	60.34
CDY21160	Canola	cytosol	26.06	60.15
Bra028672.1-P	Field mustard	cytosol	59.28	60.07
AT5G08080.3	Thale cress	cytosol	60.91	59.37
CDY51747	Canola	cytosol	25.73	58.52
CDY50666	Canola	cytosol	25.73	58.52
EER97312	Sorghum	cytosol	57.65	58.03
AT3G03800.1	Thale cress	cytosol	57.65	57.84
CDY29963	Canola	cytosol	56.35	55.81
KRH70169	Soybean	cytosol	26.71	55.78
GSMUA_Achr7P16680_001	Banana	plasma membrane	66.12	54.28
Bra031972.1-P	Field mustard	cytosol	49.19	53.93
CDY50665	Canola	cytosol	30.29	53.45
CDY51748	Canola	cytosol	30.62	53.11
Bra036431.1-P	Field mustard	cytosol	47.56	52.52
CDY21161	Canola	cytosol	29.97	51.4
EER93336	Sorghum	cytosol	43.97	43.97
EER89986	Sorghum	cytosol	40.07	39.81
EES06503	Sorghum	cytosol	39.74	38.73
KXG37622	Sorghum	cytosol	38.11	37.5
OQU78880	Sorghum	cytosol	24.43	24.35

Protein Annotations

Gene3D:1.20.5.110	Gene3D:1.20.58.70	MapMan:22.7.1.1	EntrezGene:8067228	UniProt:C5YPA6	ncoils:Coil
EnsemblPlants:EES16084	ProteinID:EES16084	ProteinID:EES16084.1	GO:GO:0000149	GO:GO:0003674	GO:GO:0005484
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005886	GO:GO:0006810	GO:GO:0006886	GO:GO:0006887	GO:GO:0006906	GO:GO:0008150
GO:GO:0009987	GO:GO:0012505	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016192
GO:GO:0031201	GO:GO:0048278	InterPro:IPR000727	PFAM:PF00804	PFAM:PF05739	ScanProsite:PS00914
PFscan:PS50192	PANTHER:PTHR19957	PANTHER:PTHR19957:SF153	SMART:SM00397	SMART:SM00503	InterPro:SNARE
EnsemblPlantsGene:SORBI_3008G115500	SUPFAM:SSF47661	unigene:Sbi.21188	InterPro:Syntaxin/epimorphin_CS	InterPro:Syntaxin_N	TMHMM:TMhelix
InterPro:T_SNARE_dom	UniParc:UPI0001A8841D	RefSeq:XP_002442246.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr8:+:52467321..52471026

Molecular Weight (calculated)

34894.0 Da

IEP (calculated)

6.828

GRAVY (calculated)

-0.542

Length

307 amino acids

Sequence
(BLAST)

001: MRNLLTDSFE LGKREQAPGN VDIELGLQGD LTSSAQPGFE GFYEQVKEIE NLLNTLTKLL KDLQNSNEES KVVTKASAMK EVKKRMEKDV NEVTKIARLA
101: KSKVEQLNKD NAANREKPGF GKGSGVDRSR TTTTVALTKK LRERILEFQT LRGEIQKEYR DVVERRVFTV TGERADEETI DKLIETGDGE QIFQRAIQEQ
201: GRGRVLDTLQ EIQERHDTVK EIERKLLDLQ QIFQDLAVLV EAQGEMLDNI ETQVTGAAEH IKTGTIHLQD AKKLQKNTRK WTCIGIIILL IIILIVILSL
301: KPWSWGK

Best Arabidopsis Sequence Match ( AT5G08080.1 )
(BLAST)

001: MNDLLKGSFE LPRGQSSREG DVELGEQQGG DQGLEDFFKK VQVIDKQYDK LDKLLKKLQA SHEESKSVTK APAMKAIKKT MEKDVDEVGS IARFIKGKLE
101: ELDRENLANR QKPGCAKGSG VDRSRTATTL SLKKKLKDKM AEFQVLRENI QQEYRDVVDR RVYTVTGERA DEDTIDELIE TGNSEQIFQK AIQEQGRGQV
201: MDTLAEIQER HDAVRDLEKK LLDLQQIFLD MAVLVDAQGE MLDNIESQVS SAVDHVQSGN TALQRAKSLQ KNSRKWMCIA IIILLIVVAV IVVGVLKPWK
301: NKSA

Arabidopsis Description

SYP132Syntaxin of plants 132 [Source:UniProtKB/TrEMBL;Acc:F4K9K2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.