Factsheet for Solyc07g052470.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, golgi, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	golgi
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400065519	Potato	cytosol	92.13	90.06
VIT_12s0059g02340.t01	Wine grape	cytosol	77.05	77.3
KRH22542	Soybean	endoplasmic reticulum, extracellular, mitochondrion	72.79	72.55
KRH26811	Soybean	cytosol	72.46	72.22
Solyc01g056810.2.1	Tomato	cytosol	56.07	67.59
TraesCS2B01G244700.1	Wheat	cytosol	64.59	65.02
TraesCS2D01G224100.1	Wheat	cytosol	64.26	64.69
TraesCS2A01G219200.1	Wheat	cytosol	63.93	64.36
HORVU2Hr1G045350.3	Barley	cytosol	61.64	64.16
EER97312	Sorghum	cytosol	63.61	63.61
Solyc10g081580.1.1	Tomato	cytosol, plastid	64.59	63.55
Os07t0528900-00	Rice	cytosol, extracellular, plasma membrane	22.3	61.26
GSMUA_Achr9P24850_001	Banana	cytosol	50.82	55.36
Zm00001d021664_P001	Maize	cytosol	57.7	49.44
Solyc01g006950.2.1	Tomato	nucleus	45.25	46.0
Solyc10g081850.1.1	Tomato	cytosol	45.25	45.54
Solyc06g053760.2.1	Tomato	cytosol	43.28	42.44
Solyc12g005580.1.1	Tomato	cytosol	40.98	40.32
Solyc02g085090.1.1	Tomato	cytosol	33.44	34.11
Solyc01g109750.2.1	Tomato	cytosol	31.15	33.93
HORVU2Hr1G043130.15	Barley	cytosol	26.89	26.11
TraesCS2B01G238200.2	Wheat	cytosol	25.57	25.32
TraesCS2A01G213400.1	Wheat	cytosol	21.31	24.25
TraesCS2D01G219400.1	Wheat	cytosol	25.57	22.48

Protein Annotations

Gene3D:1.20.5.110	Gene3D:1.20.58.70	MapMan:22.7.1.1	ncoils:Coil	GO:GO:0000149	GO:GO:0003674
GO:GO:0005484	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005886	GO:GO:0006810	GO:GO:0006886	GO:GO:0006887	GO:GO:0006906
GO:GO:0008150	GO:GO:0009987	GO:GO:0012505	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043
GO:GO:0016192	GO:GO:0031201	GO:GO:0048278	InterPro:IPR000727	UniProt:K4CFE6	PFAM:PF00804
PFAM:PF05739	PFscan:PS50192	PANTHER:PTHR19957	PANTHER:PTHR19957:SF153	SMART:SM00397	SMART:SM00503
InterPro:SNARE	SUPFAM:SSF47661	EnsemblPlantsGene:Solyc07g052470.2	EnsemblPlants:Solyc07g052470.2.1	InterPro:Syntaxin_N	TMHMM:TMhelix
InterPro:T_SNARE_dom	UniParc:UPI000276B827	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr7:+:60962756..60970983

Molecular Weight (calculated)

34412.5 Da

IEP (calculated)

8.658

GRAVY (calculated)

-0.512

Length

305 amino acids

Sequence
(BLAST)

001: MNDLLADSSF IAGKDNASKE SDIEMGNRFT RSQSDSGIDS FNKQIQEIEK QVDRLSGLLK TLKDANEETK SVTKASAMKA IRKRMEKDID EVGKIARNVK
101: AKIEATNKEN LANLQKPGCG KGTSVDRSRT NMTNSLTKKF RDVMTEFQTL RQRIDNEYRE VVERRVITVT GTRPDEETIN NLIETGNSEQ IFQNAIQGMG
201: RGQVLSTVEE IQERHDAVKE IERKLLDLHQ IYLDMAVLVE AQGDLLDNIE TQVRYAVDHV NMGTDALQTA KSLQKKSRKC MMIAIILLLI IAAIIVLSVI
301: KPWKK

Best Arabidopsis Sequence Match ( AT5G08080.1 )
(BLAST)

001: MNDLLKGSFE LPRGQSSREG DVELGEQQGG DQGLEDFFKK VQVIDKQYDK LDKLLKKLQA SHEESKSVTK APAMKAIKKT MEKDVDEVGS IARFIKGKLE
101: ELDRENLANR QKPGCAKGSG VDRSRTATTL SLKKKLKDKM AEFQVLRENI QQEYRDVVDR RVYTVTGERA DEDTIDELIE TGNSEQIFQK AIQEQGRGQV
201: MDTLAEIQER HDAVRDLEKK LLDLQQIFLD MAVLVDAQGE MLDNIESQVS SAVDHVQSGN TALQRAKSLQ KNSRKWMCIA IIILLIVVAV IVVGVLKPWK
301: NKSA

Arabidopsis Description

SYP132Syntaxin of plants 132 [Source:UniProtKB/TrEMBL;Acc:F4K9K2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.