CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY03655	Canola	cytosol	93.22	94.87
CDY71842	Canola	cytosol	73.22	87.53
CDX96377	Canola	cytosol	84.17	87.05
CDY71835	Canola	cytosol	42.61	85.66
CDX68279	Canola	cytosol	78.78	85.31
CDY58916	Canola	cytosol	20.17	84.06
AT1G72150.1	Thale cress	cytosol	80.35	80.63
CDY21368	Canola	cytosol	63.83	56.29
GSMUA_Achr2P08100_001	Banana	cytosol	38.43	55.67
CDY66581	Canola	cytosol	59.83	54.95
KRG99105	Soybean	cytosol	13.22	51.35
HORVU3Hr1G082150.1	Barley	cytosol	30.09	50.29
Zm00001d041705_P001	Maize	cytosol, mitochondrion	9.04	48.6
GSMUA_Achr7P23220_001	Banana	cytosol	42.09	48.4
GSMUA_Achr9P08580_001	Banana	cytosol, plasma membrane	38.26	48.25
CDX90715	Canola	cytosol	25.04	46.45
Solyc11g051160.1.1	Tomato	extracellular, plastid	47.48	46.35
Zm00001d005304_P001	Maize	mitochondrion	21.91	46.32
Zm00001d005249_P001	Maize	mitochondrion	22.26	46.21
VIT_18s0041g00430.t01	Wine grape	cytosol	48.17	45.71
Solyc06g064940.2.1	Tomato	nucleus	45.22	44.83
PGSC0003DMT400013297	Potato	cytosol	44.52	44.37
GSMUA_Achr6P18780_001	Banana	cytosol	44.7	44.31
GSMUA_Achr6P07270_001	Banana	cytosol, nucleus, plastid	39.65	43.85
KRH23751	Soybean	endoplasmic reticulum	45.91	43.56
CDX82180	Canola	nucleus	36.87	43.35
Zm00001d012254_P003	Maize	mitochondrion	41.91	43.35
CDY50441	Canola	plasma membrane	36.52	43.3
KRH44929	Soybean	endoplasmic reticulum	43.3	43.23
CDY03654	Canola	nucleus	36.7	43.15
GSMUA_Achr5P25970_001	Banana	cytosol	41.22	42.7
Zm00001d043169_P001	Maize	cytosol	15.65	42.65
GSMUA_Achr3P22170_001	Banana	cytosol	38.26	41.83
CDX68278	Canola	cytosol	31.83	41.69
TraesCS3A01G385300.1	Wheat	cytosol	41.39	41.18
TraesCS3B01G417500.1	Wheat	golgi	41.39	41.18
Zm00001d042664_P001	Maize	plasma membrane	40.7	40.98
KXG33790	Sorghum	cytosol	41.74	40.68
Os05t0429400-01	Rice	plasma membrane	41.22	40.51
Os01t0874700-01	Rice	plasma membrane	43.13	40.46
EES10230	Sorghum	cytosol	36.0	40.43
TraesCS3D01G378300.1	Wheat	cytosol	41.22	40.37
OQU78068	Sorghum	cytosol	35.65	38.97
CDY29572	Canola	cytosol, plastid	18.61	38.63
CDY13832	Canola	cytosol, plastid	18.61	38.63
CDX78958	Canola	cytosol, plastid	18.61	38.63
CDX73635	Canola	cytosol, plastid	18.61	38.63
Zm00001d038262_P001	Maize	plasma membrane	40.87	37.9
TraesCS1B01G279200.1	Wheat	cytosol	40.0	37.7
TraesCS1A01G268500.1	Wheat	cytosol	39.83	37.54
TraesCS1D01G268600.1	Wheat	golgi	39.65	37.38
GSMUA_Achr11P...	Banana	cytosol, endoplasmic reticulum, plastid	40.52	37.28
CDX78026	Canola	cytosol, plastid	26.61	37.14
CDX73705	Canola	cytosol, plastid	26.43	36.89
HORVU3Hr1G082110.2	Barley	plastid	40.7	36.28
Zm00001d010205_P002	Maize	cytosol	33.74	35.99
CDX90637	Canola	cytosol	24.7	35.32
CDY02316	Canola	cytosol	26.09	34.8
HORVU1Hr1G075150.4	Barley	plasma membrane	39.83	34.49
CDY09549	Canola	nucleus	31.83	34.21
CDX77578	Canola	cytosol	31.48	34.02
CDY50723	Canola	nucleus	31.3	33.96
CDY05051	Canola	nucleus	33.39	27.67
CDY29036	Canola	cytosol, endoplasmic reticulum, mitochondrion, nucleus	24.7	23.83

Protein Annotations

Gene3D:3.40.525.10	MapMan:35.1	GO:A0A078CZB9	EnsemblPlants:CDX82182	ProteinID:CDX82182	ProteinID:CDX82182.1
InterPro:CRAL-TRIO_dom	InterPro:CRAL-TRIO_dom_sf	InterPro:CRAL/TRIO_N_dom	InterPro:CRAL/TRIO_N_dom_sf	ncoils:Coil	InterPro:GOLD_dom
InterPro:GOLD_dom_sf	EnsemblPlantsGene:GSBRNA2T00137261001	InterPro:IPR001251	InterPro:IPR009038	InterPro:IPR036865	PFAM:PF00650
PFAM:PF03765	PFscan:PS50191	PFscan:PS50866	PANTHER:PTHR23324	PANTHER:PTHR23324:SF96	SMART:SM00516
SMART:SM01100	SUPFAM:SSF101576	SUPFAM:SSF46938	SUPFAM:SSF52087	UniParc:UPI0004EE7CA9	SEG:seg

Description

BnaC02g21080D

Coordinates

chrLK031827:-:1719620..1721738

Molecular Weight (calculated)

64185.6 Da

IEP (calculated)

4.528

GRAVY (calculated)

-0.588

Length

575 amino acids

Sequence
(BLAST)

001: MAQEEAQKSA DVVAVATTDK EVTVPAPVPE KEVIAPVASE EKAVPEKEEK ETSKAEKSVP VKEEETVVTE KVIAPSPEEL EKKALEEFKE LVREALNKRQ
101: FTPLAPPVKE EKTEEKKSAE ETKGEEKTEE KKEEEKPEEA VKVEEKSSDD VAPEETKPEE KSEVAAPVET KSEEKEVVPA TVTTTEKASG AEEDGTKTVE
201: AIEESIVSVT PPESSAAPVV VETERAVAPE PEPVEPEEVS IYGVPLLQDE RSDTILLKFL RARDFKVKEA LTMLKNTVQW RKENKIDELV EAEAGEEASE
301: FEKMVFAHGV DKEGHVVIYS SYGEFQNKEL FSDKEKLNKF LNWRIQLQEK CVRALDFSCP DAKSSFVFVS DFRNAPGLGK RALWQFIKRA VKQFEDNYPE
401: FATRELFINV PWWYIPYYKT FGSIITSPRT RSKMVLAGPS KSADTIFKYI APEQVPVKYG GLSNEIGGDS VTEAIVKPAA QYTIELPASE ACALSWELRV
501: LGADVTYGAQ FEPTTEGSYD VIVSKNRKIG LTDEPVITGS FKVGEPGKIV ITIDNQTSKK KKVLYRFKTQ PRSDL

Best Arabidopsis Sequence Match ( AT1G72150.1 )
(BLAST)

001: MAQEEVQKSA DVAAAPVVKE KPITDKEVTI PTPVAEKEEV AAPVSDEKAV PEKEVTPEKE APAAEAEKSV SVKEEETVVV AEKVVVLTAE EVQKKALEEF
101: KELVREALNK REFTAPVTPV KEEKTEEKKT EEETKEEEKT EEKKEETTTE VKVEEEKPAV PAAEEEKSSE AAPVETKSEE KPEEKAEVTT EKASSAEEDG
201: TKTVEAIEES IVSVSPPESA VAPVVVETVA VAEAEPVEPE EVSIWGVPLL QDERSDVILT KFLRARDFKV KEALTMLKNT VQWRKENKID ELVESGEEVS
301: EFEKMVFAHG VDKEGHVVIY SSYGEFQNKE LFSDKEKLNK FLSWRIQLQE KCVRAIDFSN PEAKSSFVFV SDFRNAPGLG KRALWQFIRR AVKQFEDNYP
401: EFAAKELFIN VPWWYIPYYK TFGSIITSPR TRSKMVLAGP SKSADTIFKY IAPEQVPVKY GGLSKDTPLT EETITEAIVK PAANYTIELP ASEACTLSWE
501: LRVLGADVSY GAQFEPTTEG SYAVIVSKTR KIGSTDEPVI TDSFKVGEPG KIVITIDNQT SKKKKVLYRF KTQ

Arabidopsis Description

PATL1Patellin-1 [Source:UniProtKB/Swiss-Prot;Acc:Q56WK6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.