CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, endoplasmic reticulum, nucleus, cytosol

Predictor Summary:

plastid 2
endoplasmic reticulum 1
mitochondrion 2
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90637	Canola	cytosol	64.09	95.02
CDX78026	Canola	cytosol, plastid	58.22	84.22
CDX73705	Canola	cytosol, plastid	57.89	83.74
AT3G51670.1	Thale cress	cytosol	56.71	82.64
CDX73635	Canola	cytosol, plastid	37.08	79.78
CDX78958	Canola	cytosol, plastid	37.08	79.78
CDY29572	Canola	cytosol, plastid	37.08	79.78
CDY13832	Canola	cytosol, plastid	37.08	79.78
KRH76050	Soybean	cytosol	47.99	67.93
Solyc09g015080.2.1	Tomato	cytosol, plastid	48.32	67.92
VIT_08s0058g00640.t01	Wine grape	cytosol, mitochondrion, nucleus	50.84	67.48
PGSC0003DMT400030364	Potato	plastid	48.15	67.37
KRH65546	Soybean	cytosol	47.48	67.22
KRH00348	Soybean	cytosol	46.81	64.14
Zm00001d052665_P001	Maize	cytosol	20.97	61.88
Os05t0345175-01	Rice	cytosol	7.89	59.49
GSMUA_Achr2P18920_001	Banana	plastid	40.6	57.35
VIT_01s0137g00470.t01	Wine grape	cytosol	14.6	56.86
GSMUA_Achr5P07450_001	Banana	plastid	37.75	56.82
EES18028	Sorghum	plastid	40.94	56.61
GSMUA_Achr9P17890_001	Banana	cytosol	36.24	54.82
GSMUA_Achr3P09950_001	Banana	plastid	38.76	54.48
Zm00001d038005_P001	Maize	mitochondrion, plastid	39.09	54.44
TraesCS1D01G202700.1	Wheat	plastid	38.59	54.37
TraesCS1B01G213900.1	Wheat	plastid	38.26	53.9
TraesCS1A01G198900.1	Wheat	plastid	38.09	53.66
Os05t0345100-00	Rice	plastid	25.67	49.04
Zm00001d010049_P001	Maize	plastid	40.6	48.21
CDX90715	Canola	cytosol	22.32	42.9
CDY50441	Canola	plasma membrane	29.19	35.88
CDX82180	Canola	nucleus	29.19	35.58
CDY03654	Canola	nucleus	29.19	35.58
CDX68278	Canola	cytosol	25.67	34.85
CDY58916	Canola	cytosol	7.89	34.06
CDY02316	Canola	cytosol	23.66	32.71
CDY50723	Canola	nucleus	27.68	31.13
CDY09549	Canola	nucleus	27.68	30.84
CDX77578	Canola	cytosol	27.52	30.83
CDY71835	Canola	cytosol	13.26	27.62
HORVU1Hr1G051510.3	Barley	plastid	21.64	27.56
CDX68279	Canola	cytosol	23.32	26.18
CDX96377	Canola	cytosol	23.83	25.54
CDY03655	Canola	cytosol	23.99	25.31
CDX82182	Canola	cytosol	23.83	24.7
CDY05051	Canola	nucleus	28.19	24.21
CDY71842	Canola	cytosol	18.62	23.08
CDY21368	Canola	cytosol	22.82	20.86
CDY66581	Canola	cytosol	20.3	19.33

Protein Annotations

Gene3D:3.40.525.10	MapMan:35.1	GO:A0A078GU63	UniProt:A0A078GU63	EnsemblPlants:CDY29036	ProteinID:CDY29036
ProteinID:CDY29036.1	InterPro:CRAL-TRIO_dom	InterPro:CRAL-TRIO_dom_sf	InterPro:CRAL/TRIO_N_dom	InterPro:CRAL/TRIO_N_dom_sf	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	InterPro:GOLD_dom	InterPro:GOLD_dom_sf	EnsemblPlantsGene:GSBRNA2T00041773001	InterPro:IPR001251
InterPro:IPR009038	InterPro:IPR036865	PFAM:PF00650	PFAM:PF03765	PFAM:PF13966	PFscan:PS50191
PFscan:PS50866	PANTHER:PTHR23324	PANTHER:PTHR23324:SF57	InterPro:RVT-Znf	SMART:SM00516	SMART:SM01100
SUPFAM:SSF101576	SUPFAM:SSF46938	SUPFAM:SSF52087	TMHMM:TMhelix	UniParc:UPI0004EF2DC0	SEG:seg

Description

BnaC07g32420DBnaC07g32420D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GU63]

Coordinates

chrLK032229:+:265647..272143

Molecular Weight (calculated)

68336.4 Da

IEP (calculated)

9.417

GRAVY (calculated)

-0.290

Length

596 amino acids

Sequence
(BLAST)

001: MLNGWGLNVD PLCLLCNTAQ KSRNHLFFEC RYSESVWRRI AYRCDLQVLT SWDDIVAQLQ DLRTNHDSLR LPLLATQAVI YWFWTERNSR FHRQTFKPPK
101: AIISLIDKQI RNRLQSIRHA NPRASSAMSQ FWPIKPSHGS APTPFDHQST EPKKTFMTTL IPLRPSHFKE DSYFVSELKP SEAKSLQDLK QKLSSSSFAS
201: SSSMWGVPLL GGDDRADVIL LKFLRARDFK VGDSLRMLEK CLEWREEFKT EKLTEEDLDF KDLEGRVAYM RGYDKEGHPV CYNAYGVFKE REMYERVFGD
301: EEKLNKFLRW RVQVLERGVK LLHFKPGGVN SIIQDNYPEM VATKKLGNRV LRGFLFLLGD KNLKLEIMLL YLLSEKLSKL LRFFSCAFAM FCVCKSWKLV
401: GLFLLSSTAT VTYTEGFCVA IFINVPWYFS VIYSMFSPFL THRTKSKFVM SKEGNAAETL YKFIRPEDIP VQYGGLSRPT DSQKGPPKPA SEFSIKGGEK
501: VNIQIEGIEG GATISWDIVV GGWDLEYTAE FVPNAEESYA IVVEKPRRMK ASDEAVCNSF TTGEAGKLII SVDNSLSRKK KVAAYHYTVR KSTTAV

Best Arabidopsis Sequence Match ( AT3G51670.1 )
(BLAST)

001: MDASLSPFDH QKTQNTEPKK SFITSLITLR SNNIKEDTYF VSELKPTEQK SLQELKEKLS ASSSKASSMW GVSLLGGDDK ADVILLKFLR ARDFKVADSL
101: RMLEKCLEWR EEFKAEKLTE EDLGFKDLEG KVAYMRGYDK EGHPVCYNAY GVFKEKEMYE RVFGDEEKLN KFLRWRVQVL ERGVKMLHFK PGGVNSIIQV
201: TDLKDMPKRE LRVASNQILS LFQDNYPELV ATKIFINVPW YFSVIYSMFS PFLTQRTKSK FVMSKEGNAA ETLYKFIRPE DIPVQYGGLS RPTDSQNGPP
301: KPASEFSIKG GEKVNIQIEG IEGGATITWD IVVGGWDLEY SAEFVPNAEE SYAIVVEKPK KMKATDEAVC NSFTTVEAGK LILSVDNTLS RKKKVAAYRY
401: TVRKSTTTV

Arabidopsis Description

PATL6Patellin-6 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCU1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.