CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 3
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH76050	Soybean	cytosol	77.01	79.57
Zm00001d052665_P001	Maize	cytosol	36.78	79.21
KRH65546	Soybean	cytosol	76.55	79.1
Solyc09g015080.2.1	Tomato	cytosol, plastid	75.86	77.83
PGSC0003DMT400030364	Potato	plastid	75.17	76.76
Bra036782.1-P	Field mustard	cytosol, plastid	70.11	74.03
CDX78026	Canola	cytosol, plastid	70.11	74.03
AT3G51670.1	Thale cress	cytosol	69.43	73.84
CDY13832	Canola	cytosol, plastid	46.9	73.65
CDY29572	Canola	cytosol, plastid	46.9	73.65
CDX78958	Canola	cytosol, plastid	46.9	73.65
CDX73635	Canola	cytosol, plastid	46.9	73.65
CDX73705	Canola	cytosol, plastid	69.66	73.54
VIT_08s0058g00640.t01	Wine grape	cytosol, mitochondrion, nucleus	75.17	72.83
VIT_01s0137g00470.t01	Wine grape	cytosol	24.83	70.59
CDX90637	Canola	cytosol	64.14	69.4
Os05t0345175-01	Rice	cytosol	12.18	67.09
GSMUA_Achr5P07450_001	Banana	plastid	60.69	66.67
EES18028	Sorghum	plastid	65.29	65.89
GSMUA_Achr9P17890_001	Banana	cytosol	59.54	65.74
Zm00001d038005_P001	Maize	mitochondrion, plastid	64.6	65.65
GSMUA_Achr2P18920_001	Banana	plastid	63.68	65.64
GSMUA_Achr3P09950_001	Banana	plastid	63.68	65.33
Bra012843.1-P	Field mustard	cytosol	65.29	64.25
TraesCS1D01G202700.1	Wheat	plastid	62.07	63.83
TraesCS1B01G213900.1	Wheat	plastid	61.84	63.59
TraesCS1A01G198900.1	Wheat	plastid	61.38	63.12
Os05t0345100-00	Rice	plastid	41.61	58.01
Zm00001d010049_P001	Maize	plastid	65.29	56.57
KRG99105	Soybean	cytosol	16.78	49.32
CDY29036	Canola	cytosol, endoplasmic reticulum, mitochondrion, nucleus	64.14	46.81
KRH23753	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	39.77	40.8
KRH36854	Soybean	cytosol	43.45	40.47
KRH11846	Soybean	cytosol	42.76	40.0
KRH59683	Soybean	cytosol	41.84	33.77
KRH54012	Soybean	nucleus	42.99	33.57
KRH63933	Soybean	plasma membrane	42.76	33.39
HORVU1Hr1G051510.3	Barley	plastid	34.48	32.05
KRH44929	Soybean	endoplasmic reticulum	42.07	31.77
KRH41016	Soybean	endoplasmic reticulum	41.61	31.48
KRH19560	Soybean	cytosol	32.87	30.43
KRH32187	Soybean	cytosol	32.87	30.3
KRH23751	Soybean	endoplasmic reticulum	41.84	30.03

Protein Annotations

EntrezGene:100814996	Gene3D:3.40.525.10	MapMan:35.1	EMBL:ACUP02011436	InterPro:CRAL-TRIO_dom	InterPro:CRAL-TRIO_dom_sf
InterPro:CRAL/TRIO_N_dom	InterPro:CRAL/TRIO_N_dom_sf	EnsemblPlantsGene:GLYMA_18G207900	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150
GO:GO:0016020	GO:GO:0016021	InterPro:GOLD_dom	InterPro:GOLD_dom_sf	UniProt:I1N333	InterPro:IPR001251
InterPro:IPR009038	InterPro:IPR036865	EnsemblPlants:KRH00348	ProteinID:KRH00348	ProteinID:KRH00348.1	PFAM:PF00650
PFAM:PF03765	PFscan:PS50191	PFscan:PS50866	PANTHER:PTHR23324	PANTHER:PTHR23324:SF57	SMART:SM00516
SMART:SM01100	SUPFAM:SSF101576	SUPFAM:SSF46938	SUPFAM:SSF52087	UniParc:UPI000295D6C6	SEG:seg

Description

hypothetical protein

Coordinates

chr18:+:49270137..49273925

Molecular Weight (calculated)

49358.0 Da

IEP (calculated)

9.167

GRAVY (calculated)

-0.405

Length

435 amino acids

Sequence
(BLAST)

001: MQRFHLGLPH SPPMDTSTPF QDLPEASPKP FFKKTTLTSF IMSSTPSFKE DTYYISHLKS SEKKALQDLK NKLQSSYSST PSMWGVPLLN NNNADNADVI
101: LLKFLRARDF RVHDALSMLL KCLSWRTEFG ADNIVDEELG GFKELEGVVA YTHGYDREGH PVCYNAYGVF KDREMYENVF GDEEKLKKFL RWRVQVLERG
201: VRMLHFKPGG VNSLIQVTDL KDMPKRELRI ASNQILSLFQ DNYPEMVARK IFINVPWYFS VLYSMFSPFL TQRTKSKFVI SKEGNAAETL YKFIRPENIP
301: VRYGGLSRPS DLENGPPKPA SEFTVKGGEI VNIQIEGIES GATITWDIVV GGWDLEYSAE FVPIAQGSYT LAVDKARKIE ATEEAIHNSF TSKEAGKMVL
401: SVDNSASRKK KVAAYRYFVR KSSTPTPSEV QLSPK

Best Arabidopsis Sequence Match ( AT3G51670.1 )
(BLAST)

001: MDASLSPFDH QKTQNTEPKK SFITSLITLR SNNIKEDTYF VSELKPTEQK SLQELKEKLS ASSSKASSMW GVSLLGGDDK ADVILLKFLR ARDFKVADSL
101: RMLEKCLEWR EEFKAEKLTE EDLGFKDLEG KVAYMRGYDK EGHPVCYNAY GVFKEKEMYE RVFGDEEKLN KFLRWRVQVL ERGVKMLHFK PGGVNSIIQV
201: TDLKDMPKRE LRVASNQILS LFQDNYPELV ATKIFINVPW YFSVIYSMFS PFLTQRTKSK FVMSKEGNAA ETLYKFIRPE DIPVQYGGLS RPTDSQNGPP
301: KPASEFSIKG GEKVNIQIEG IEGGATITWD IVVGGWDLEY SAEFVPNAEE SYAIVVEKPK KMKATDEAVC NSFTTVEAGK LILSVDNTLS RKKKVAAYRY
401: TVRKSTTTV

Arabidopsis Description

PATL6Patellin-6 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCU1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.