CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra036782.1-P	Field mustard	cytosol, plastid	100.0	100.0
CDX73635	Canola	cytosol, plastid	67.23	100.0
CDX78958	Canola	cytosol, plastid	67.23	100.0
CDY29572	Canola	cytosol, plastid	67.23	100.0
CDY13832	Canola	cytosol, plastid	67.23	100.0
CDX73705	Canola	cytosol, plastid	99.27	99.27
AT3G51670.1	Thale cress	cytosol	91.26	91.93
CDX90637	Canola	cytosol	85.19	87.31
Solyc09g015080.2.1	Tomato	cytosol, plastid	77.43	75.24
KRH76050	Soybean	cytosol	76.7	75.06
KRH65546	Soybean	cytosol	76.21	74.58
PGSC0003DMT400030364	Potato	plastid	76.94	74.41
Zm00001d052665_P001	Maize	cytosol	36.41	74.26
VIT_08s0058g00640.t01	Wine grape	cytosol, mitochondrion, nucleus	76.94	70.6
KRH00348	Soybean	cytosol	74.03	70.11
VIT_01s0137g00470.t01	Wine grape	cytosol	25.49	68.63
GSMUA_Achr2P18920_001	Banana	plastid	65.29	63.74
EES18028	Sorghum	plastid	66.5	63.57
GSMUA_Achr5P07450_001	Banana	plastid	60.92	63.38
GSMUA_Achr9P17890_001	Banana	cytosol	59.95	62.69
Os05t0345175-01	Rice	cytosol	11.89	62.03
TraesCS1D01G202700.1	Wheat	plastid	63.35	61.7
GSMUA_Achr3P09950_001	Banana	plastid	63.35	61.56
Zm00001d038005_P001	Maize	mitochondrion, plastid	63.84	61.45
TraesCS1B01G213900.1	Wheat	plastid	62.86	61.23
TraesCS1A01G198900.1	Wheat	plastid	62.62	60.99
Os05t0345100-00	Rice	plastid	44.17	58.33
CDY29036	Canola	cytosol, endoplasmic reticulum, mitochondrion, nucleus	84.22	58.22
Zm00001d010049_P001	Maize	plastid	66.02	54.18
CDX90715	Canola	cytosol	36.16	48.06
CDY50441	Canola	plasma membrane	44.66	37.94
CDX82180	Canola	nucleus	44.9	37.83
CDY03654	Canola	nucleus	44.9	37.83
CDX68278	Canola	cytosol	38.59	36.22
CDY02316	Canola	cytosol	37.86	36.19
CDY58916	Canola	cytosol	11.41	34.06
CDY50723	Canola	nucleus	42.96	33.4
CDX77578	Canola	cytosol	42.96	33.27
CDY09549	Canola	nucleus	42.72	32.9
CDY71835	Canola	cytosol	22.09	31.82
HORVU1Hr1G051510.3	Barley	plastid	33.74	29.7
CDX68279	Canola	cytosol	35.68	27.68
CDY03655	Canola	cytosol	37.62	27.43
CDX96377	Canola	cytosol	36.89	27.34
CDY05051	Canola	nucleus	45.39	26.95
CDX82182	Canola	cytosol	37.14	26.61
CDY71842	Canola	cytosol	29.37	25.16
CDY21368	Canola	cytosol	35.19	22.24
CDY66581	Canola	cytosol	31.8	20.93

Protein Annotations

Gene3D:3.40.525.10	MapMan:35.1	GO:A0A078CLH7	EnsemblPlants:CDX78026	ProteinID:CDX78026	ProteinID:CDX78026.1
InterPro:CRAL-TRIO_dom	InterPro:CRAL-TRIO_dom_sf	InterPro:CRAL/TRIO_N_dom	InterPro:CRAL/TRIO_N_dom_sf	InterPro:GOLD_dom	InterPro:GOLD_dom_sf
EnsemblPlantsGene:GSBRNA2T00129303001	InterPro:IPR001251	InterPro:IPR009038	InterPro:IPR036865	PFAM:PF00650	PFAM:PF03765
PFscan:PS50191	PFscan:PS50866	PANTHER:PTHR23324	PANTHER:PTHR23324:SF57	SMART:SM00516	SMART:SM01100
SUPFAM:SSF101576	SUPFAM:SSF46938	SUPFAM:SSF52087	UniParc:UPI0002542D3B	SEG:seg	:

Description

BnaA09g32210D

Coordinates

chrLK031814:+:690070..692392

Molecular Weight (calculated)

46585.8 Da

IEP (calculated)

8.639

GRAVY (calculated)

-0.426

Length

412 amino acids

Sequence
(BLAST)

001: MDSALSPSPF DPTKTPNAEP KKSFMSSLIT LRSNHFKEDT YFVSELKPAE QKALQDLKEK LSSSSFGASS MWGVPLLGGD DRADVILLKF LRARDFKVGD
101: SLRMLEKCLE WREEFKAEKL TEEDLGFKDL EGKVAYMRGY DKEGHPVCYN AYGVFKEREM YERVFGDDEK LKSFLRWRVQ VLERGVKMLH FKPGGVNSMI
201: QVTDLKDMPK RELRVASNQI LSLFQDNYPE MVATKIFINV PWYFSVIYSM FSPFLTHRTK SKFVMSKEGN AAETLYKFIR PEDIPVQYGG LSRPTDSQNG
301: PPKPASEFSI KGGEKVNIQI EGIEGGATIT WDIVVGGWDL EYTAEFVPNA EGSYAIVVEK PRKMKASDEA VCNSFTTGEA GKLILSVDNT LSRKKKVAAY
401: RYTVRKSTTA AV

Best Arabidopsis Sequence Match ( AT3G51670.1 )
(BLAST)

001: MDASLSPFDH QKTQNTEPKK SFITSLITLR SNNIKEDTYF VSELKPTEQK SLQELKEKLS ASSSKASSMW GVSLLGGDDK ADVILLKFLR ARDFKVADSL
101: RMLEKCLEWR EEFKAEKLTE EDLGFKDLEG KVAYMRGYDK EGHPVCYNAY GVFKEKEMYE RVFGDEEKLN KFLRWRVQVL ERGVKMLHFK PGGVNSIIQV
201: TDLKDMPKRE LRVASNQILS LFQDNYPELV ATKIFINVPW YFSVIYSMFS PFLTQRTKSK FVMSKEGNAA ETLYKFIRPE DIPVQYGGLS RPTDSQNGPP
301: KPASEFSIKG GEKVNIQIEG IEGGATITWD IVVGGWDLEY SAEFVPNAEE SYAIVVEKPK KMKATDEAVC NSFTTVEAGK LILSVDNTLS RKKKVAAYRY
401: TVRKSTTTV

Arabidopsis Description

PATL6Patellin-6 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCU1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.