Factsheet for PGSC0003DMT400030364

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 1
cytosol 3
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g015080.2.1	Tomato	cytosol, plastid	97.65	98.11
KRH76050	Soybean	cytosol	80.75	81.71
KRH65546	Soybean	cytosol	80.52	81.47
Zm00001d052665_P001	Maize	cytosol	37.56	79.21
AT3G51670.1	Thale cress	cytosol	75.35	78.48
VIT_08s0058g00640.t01	Wine grape	cytosol, mitochondrion, nucleus	82.16	77.95
Bra036782.1-P	Field mustard	cytosol, plastid	74.41	76.94
CDX78026	Canola	cytosol, plastid	74.41	76.94
CDX73705	Canola	cytosol, plastid	73.94	76.46
KRH00348	Soybean	cytosol	76.76	75.17
CDY29572	Canola	cytosol, plastid	48.36	74.37
CDX73635	Canola	cytosol, plastid	48.36	74.37
CDY13832	Canola	cytosol, plastid	48.36	74.37
CDX78958	Canola	cytosol, plastid	48.36	74.37
VIT_01s0137g00470.t01	Wine grape	cytosol	26.53	73.86
CDX90637	Canola	cytosol	67.37	71.39
GSMUA_Achr5P07450_001	Banana	plastid	63.38	68.18
GSMUA_Achr9P17890_001	Banana	cytosol	62.44	67.51
GSMUA_Achr2P18920_001	Banana	plastid	66.43	67.06
Bra012843.1-P	Field mustard	cytosol	69.01	66.52
EES18028	Sorghum	plastid	65.96	65.2
GSMUA_Achr3P09950_001	Banana	plastid	64.79	65.09
Os05t0345175-01	Rice	cytosol	11.97	64.56
Zm00001d038005_P001	Maize	mitochondrion, plastid	64.32	64.02
TraesCS1A01G198900.1	Wheat	plastid	63.15	63.59
TraesCS1B01G213900.1	Wheat	plastid	63.15	63.59
TraesCS1D01G202700.1	Wheat	plastid	63.15	63.59
Os05t0345100-00	Rice	plastid	43.66	59.62
Zm00001d010049_P001	Maize	plastid	65.73	55.78
CDY29036	Canola	cytosol, endoplasmic reticulum, mitochondrion, nucleus	67.37	48.15
PGSC0003DMT400054383	Potato	cytosol	44.37	40.21
PGSC0003DMT400065886	Potato	cytosol	45.31	39.31
PGSC0003DMT400013297	Potato	cytosol	44.37	32.76
PGSC0003DMT400026646	Potato	cytosol	32.16	30.79
HORVU1Hr1G051510.3	Barley	plastid	33.33	30.34

Protein Annotations

EntrezGene:102590713	Gene3D:3.40.525.10	MapMan:35.1	InterPro:CRAL-TRIO_dom	InterPro:CRAL-TRIO_dom_sf	InterPro:CRAL/TRIO_N_dom
InterPro:CRAL/TRIO_N_dom_sf	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0016020	InterPro:GOLD_dom
InterPro:GOLD_dom_sf	InterPro:IPR001251	InterPro:IPR009038	InterPro:IPR036865	UniProt:M1AU41	PFAM:PF00650
PFAM:PF03765	EnsemblPlantsGene:PGSC0003DMG400011618	PGSC:PGSC0003DMG400011618	EnsemblPlants:PGSC0003DMT400030364	PFscan:PS50191	PFscan:PS50866
PANTHER:PTHR23324	PANTHER:PTHR23324:SF57	SMART:SM00516	SMART:SM01100	SUPFAM:SSF101576	SUPFAM:SSF46938
SUPFAM:SSF52087	UniParc:UPI0002954EA4	RefSeq:XP_006360825.1	SEG:seg	:	:

Description

Patellin-6 [Source:PGSC_GENE;Acc:PGSC0003DMG400011618]

Coordinates

chr9:+:11458965..11461603

Molecular Weight (calculated)

47907.4 Da

IEP (calculated)

9.225

GRAVY (calculated)

-0.388

Length

426 amino acids

Sequence
(BLAST)

001: MDSSSPISVK KALKSQESAP QSSPKPQSLK KSFVTSLMEA TTLRTPSFKE DSYFTSHLKP SEKKALQELK DKLQAAASSS CCSMWGIPLL GGDEKADVIL
101: LKFLRARDFK VSDSLHMLEK CLSWRKEFGA DTILEGDFSG FKELEGVVAY MNGYDRDGHP VCYNAYGVFK DKEMYERIFG DEEKLKKFLR WRVQVLERGI
201: EQLHFKPGGI NSIIQVTDLK DMPKRELRVA SNQILSLFQD NYPEMVARKI FINVPWYFSV LYSMFSPFLT QRTKSKFVIA KEGNVAETLY KFIRPEDIPV
301: QYGGLSRPTD LQNGPPKPAS EFTVKGGEKV NIQIEGIEGG ATITWDIVVG GWDLEYSAEF VPNGEGSYTI AVEKPRKIAA NEEAIHNSFT SKEAGKMVLS
401: VDNTASRKRK VAAYRYIVRK SATISA

Best Arabidopsis Sequence Match ( AT3G51670.1 )
(BLAST)

001: MDASLSPFDH QKTQNTEPKK SFITSLITLR SNNIKEDTYF VSELKPTEQK SLQELKEKLS ASSSKASSMW GVSLLGGDDK ADVILLKFLR ARDFKVADSL
101: RMLEKCLEWR EEFKAEKLTE EDLGFKDLEG KVAYMRGYDK EGHPVCYNAY GVFKEKEMYE RVFGDEEKLN KFLRWRVQVL ERGVKMLHFK PGGVNSIIQV
201: TDLKDMPKRE LRVASNQILS LFQDNYPELV ATKIFINVPW YFSVIYSMFS PFLTQRTKSK FVMSKEGNAA ETLYKFIRPE DIPVQYGGLS RPTDSQNGPP
301: KPASEFSIKG GEKVNIQIEG IEGGATITWD IVVGGWDLEY SAEFVPNAEE SYAIVVEKPK KMKATDEAVC NSFTTVEAGK LILSVDNTLS RKKKVAAYRY
401: TVRKSTTTV

Arabidopsis Description

PATL6Patellin-6 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCU1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.