Factsheet for PGSC0003DMT400054383

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g070210.2.1	Tomato	cytosol	95.32	95.12
KRH11846	Soybean	cytosol	62.55	63.23
VIT_10s0003g05480.t01	Wine grape	cytosol	63.62	62.82
KRH36854	Soybean	cytosol	62.34	62.74
Bra023118.1-P	Field mustard	cytosol	54.04	51.73
CDY02316	Canola	cytosol	46.81	51.04
AT1G30690.2	Thale cress	cytosol	56.38	49.07
CDX77578	Canola	cytosol	55.32	48.87
GSMUA_Achr9P30580_001	Banana	cytosol	56.38	48.71
Bra026229.1-P	Field mustard	cytosol	55.11	48.68
CDY50723	Canola	nucleus	54.47	48.3
CDY09549	Canola	nucleus	54.89	48.22
EER88801	Sorghum	cytosol	51.91	46.74
Zm00001d046995_P001	Maize	plasma membrane	51.91	46.12
PGSC0003DMT400030364	Potato	plastid	40.21	44.37
Os06t0671800-01	Rice	endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, plastid, vacuole	32.77	42.42
PGSC0003DMT400065886	Potato	cytosol	44.26	42.36
HORVU7Hr1G107070.1	Barley	cytosol	48.51	42.14
TraesCS7A01G466800.1	Wheat	cytosol	48.72	41.26
TraesCS7B01G368100.1	Wheat	nucleus	49.36	40.99
TraesCS7D01G454600.1	Wheat	cytosol	49.15	40.38
PGSC0003DMT400026646	Potato	cytosol	37.87	40.0
PGSC0003DMT400013297	Potato	cytosol	44.68	36.4

Protein Annotations

Gene3D:3.40.525.10	MapMan:35.1	InterPro:CRAL-TRIO_dom	InterPro:CRAL-TRIO_dom_sf	InterPro:CRAL/TRIO_N_dom	InterPro:CRAL/TRIO_N_dom_sf
ncoils:Coil	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0005829	GO:GO:0005886	GO:GO:0016020	InterPro:GOLD_dom	InterPro:IPR001251	InterPro:IPR009038
InterPro:IPR036865	UniProt:M1BW83	PFAM:PF00650	PFAM:PF03765	EnsemblPlantsGene:PGSC0003DMG400021106	PGSC:PGSC0003DMG400021106
EnsemblPlants:PGSC0003DMT400054383	PRINTS:PR00180	PFscan:PS50191	PFscan:PS50866	PANTHER:PTHR23324	PANTHER:PTHR23324:SF48
SMART:SM00516	SMART:SM01100	SUPFAM:SSF46938	SUPFAM:SSF52087	UniParc:UPI000296F6E0	SEG:seg

Description

Patellin-4 [Source:PGSC_GENE;Acc:PGSC0003DMG400021106]

Coordinates

chr2:-:29387465..29390057

Molecular Weight (calculated)

53652.6 Da

IEP (calculated)

4.749

GRAVY (calculated)

-0.553

Length

470 amino acids

Sequence
(BLAST)

001: MTVEMQCEAT QVAEVVVPQE ELVAANKVEV NEKVKKDEEE ESKPNTIEKS SSYREESNFL SDLKENEKKA LNELKSIVEE AILGNTLFKK EETNKSPEEE
101: GKNEENRDTV EGKEEEKEGD LDVVEVDREI SIWGVPLLPS KGDEKTNVVL LKFLRARDYK VNESFEMLKK TLQWRKDFNI QSILEEDLGS DLAPAAYMSG
201: VDNQGHPICY NIFGVLDDEE IYNKTFGTEE KRNQFLRWRV QLMEKGIQQL DFKAGGVSSL LQINDLKNSP GPSKKEVRVA TKQAVDLLQD NYPEFVAKNI
301: FINVPFWYYA VHSLLSPFLT QRTKSKFVFV RPAKVTETLL KYIPIHEIPI QYGGLKRENE FEFSVSDCEA LEILLKAGST ETIEIPAVDV ESTFIWDVTI
401: VGGEVSYKEE FVPEDETSYT IIIQKDKKVS STIHNTFKNT EAGKVVLTIK NSSSKKKKAF YRHKINKSAI

Best Arabidopsis Sequence Match ( AT4G09160.1 )
(BLAST)

001: MSQDSATTTP PPPLTSDVSM PSGEEDEPKH VTSEEEAPVT SETNLKLPLM PELEESNHTA EVVSEKVTPE TMTLESEGLN HAAEDSEQTH EVTPETETAK
101: LEVLNHTAED SEQTHEVTPE KETVKSEFLN HVAEDSEQTH EVTPETETVK SEVLNHAAED SEQPRGVTPT PETETSEADT SLLVTSETEE PNHAAEDYSE
201: TEPSQKLMLE QRRKYMEVED WTEPELPDEA VLEAAASVPE PKQPEPQTPP PPPSTTTSTV ASRSLAEMMN REEAEVEEKQ KIQIPRSLGS FKEETNKISD
301: LSETELNALQ ELRHLLQVSQ DSSKTSIWGV PLLKDDRTDV VLLKFLRARD FKPQEAYSML NKTLQWRIDF NIEELLDENL GDDLDKVVFM QGQDKENHPV
401: CYNVYGEFQN KDLYQKTFSD EEKRERFLRW RIQFLEKSIR NLDFVAGGVS TICQVNDLKN SPGPGKTELR LATKQALHLL QDNYPEFVSK QIFINVPWWY
501: LAFYRIISPF MSQRSKSKLV FAGPSRSAET LLKYISPEHV PVQYGGLSVD NCECNSDFTH DDIATEITVK PTTKQTVEII VYEKCTIVWE IRVVGWEVSY
601: GAEFVPENKE GYTVIIQKPR KMTAKNELVV SHSFKVGEVG RILLTVDNPT STKKMLIYRF KVKPLACE

Arabidopsis Description

PATL5Patellin-5 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0R2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.