Factsheet for Solyc02g070210.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400054383	Potato	cytosol	95.12	95.32
KRH11846	Soybean	cytosol	62.84	63.66
KRH36854	Soybean	cytosol	62.63	63.17
VIT_10s0003g05480.t01	Wine grape	cytosol	63.27	62.6
Bra023118.1-P	Field mustard	cytosol	54.99	52.75
CDY02316	Canola	cytosol	47.56	51.97
AT1G30690.2	Thale cress	cytosol	57.32	50.0
CDX77578	Canola	cytosol	55.84	49.44
Bra026229.1-P	Field mustard	cytosol	55.63	49.25
GSMUA_Achr9P30580_001	Banana	cytosol	56.26	48.71
CDY50723	Canola	nucleus	54.78	48.68
CDY09549	Canola	nucleus	54.56	48.04
EER88801	Sorghum	cytosol	52.87	47.7
Zm00001d046995_P001	Maize	plasma membrane	52.87	47.07
Solyc09g015080.2.1	Tomato	cytosol, plastid	40.55	45.05
HORVU7Hr1G107070.1	Barley	cytosol	48.83	42.51
Os06t0671800-01	Rice	endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, plastid, vacuole	32.7	42.42
Solyc11g027880.1.1	Tomato	cytosol, endoplasmic reticulum, plastid	43.74	42.04
TraesCS7A01G466800.1	Wheat	cytosol	49.26	41.8
TraesCS7B01G368100.1	Wheat	nucleus	49.68	41.34
TraesCS7D01G454600.1	Wheat	cytosol	49.47	40.73
Solyc09g025230.2.1	Tomato	cytosol	37.37	39.11
Solyc06g064940.2.1	Tomato	nucleus	44.37	36.03
Solyc11g051160.1.1	Tomato	extracellular, plastid	44.16	35.31

Protein Annotations

Gene3D:3.40.525.10	MapMan:35.1	InterPro:CRAL-TRIO_dom	InterPro:CRAL-TRIO_dom_sf	InterPro:CRAL/TRIO_N_dom	InterPro:CRAL/TRIO_N_dom_sf
ncoils:Coil	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0005829	GO:GO:0005886	GO:GO:0016020	InterPro:GOLD_dom	InterPro:IPR001251	InterPro:IPR009038
InterPro:IPR036865	UniProt:K4B803	PFAM:PF00650	PFAM:PF03765	PRINTS:PR00180	PFscan:PS50191
PFscan:PS50866	PANTHER:PTHR23324	PANTHER:PTHR23324:SF82	SMART:SM00516	SMART:SM01100	SUPFAM:SSF46938
SUPFAM:SSF52087	EnsemblPlantsGene:Solyc02g070210.2	EnsemblPlants:Solyc02g070210.2.1	UniParc:UPI000276867B	SEG:seg	:

Description

Patellin-4 [Source:Projected from Arabidopsis thaliana (AT1G30690) UniProtKB/Swiss-Prot;Acc:Q94C59]

Coordinates

chr2:-:39975126..39977612

Molecular Weight (calculated)

53655.5 Da

IEP (calculated)

4.623

GRAVY (calculated)

-0.512

Length

471 amino acids

Sequence
(BLAST)

001: MTVEVQCEAT QVAEVVVPQE ELVAANKVVE EVEVNEKVKE DEEEESKPNT IEKSSSYREE SNFLSDLKEN EKKALNELKS IVEEAIVGNT LFKKEETNKS
101: LEEEGKNEEN PDANIEEKEG DLDVVEVDRE ISIWGVPILP SKGDEKTNVV LLKFLRARDY KVNESFEMLK KTLQWRKDFN IQSILEEDLG SDLAPAAYMS
201: GVDNQGHPIC YNIFGVLEDE EIYNKTFGTE EKRNQFLRWR VQLMEKGIQQ LDFKAGGVSS LLQINDLKNS PGPSKKEVRV ATKQAVDLLQ DNYPEFVAKN
301: IFINVPFWYY AVHSLLSPFL TQRTKSKFVF ARPAKVTETL LKYIPIHEIP IQYGGLKREN DFEFSASDCE ASEILLKAGS IETIEIPAVD VESTFIWDVT
401: IVGGEVSYKE EFVPEDETSY TIIIQKDKKV SSTIRNTFKN TEAGKVVLTI KNTSSKKKKA FYRHKITKST I

Best Arabidopsis Sequence Match ( AT1G30690.2 )
(BLAST)

001: MTAEVKVEEK QVESEVVIAP AVVPEETTVK AVVEETKVEE DESKPEGVEK SASFKEESDF FADLKESEKK ALSDLKSKLE EAIVDNTLLK TKKKESSPMK
101: EKKEEVVKPE AEVEKKKEEA AEEKVEEEKK SEAVVTEEAP KAETVEAVVT EEIIPKEEVT TVVEKVEEET KEEEKKTEDV VTEEVKAETI EVEDEDESVD
201: KDIELWGVPL LPSKGAESTD VILLKFLRAR DFKVNEAFEM LKKTLKWRKQ NKIDSILGEE FGEDLATAAY MNGVDRESHP VCYNVHSEEL YQTIGSEKNR
301: EKFLRWRFQL MEKGIQKLNL KPGGVTSLLQ IHDLKNAPGV SRTEIWVGIK KVIETLQDNY PEFVSRNIFI NVPFWFYAMR AVLSPFLTQR TKSKFVVARP
401: AKVRETLLKY IPADELPVQY GGFKTVDDTE FSNETVSEVV VKPGSSETIE IPAPETEGTL VWDIAVLGWE VNYKEEFVPT EEGAYTVIVQ KVKKMGANEG
501: PIRNSFKNSQ AGKIVLTVDN VSGKKKKVLY RYRTKTESSS

Arabidopsis Description

PATL4Patellin-4 [Source:UniProtKB/Swiss-Prot;Acc:Q94C59]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.