Factsheet for VIT_10s0003g05480.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH11846	Soybean	cytosol	65.97	67.53
KRH36854	Soybean	cytosol	65.55	66.81
VIT_09s0002g09040.t01	Wine grape	cytosol	15.97	66.67
PGSC0003DMT400054383	Potato	cytosol	62.82	63.62
Solyc02g070210.2.1	Tomato	cytosol	62.6	63.27
CDY02316	Canola	cytosol	53.78	59.4
Bra023118.1-P	Field mustard	cytosol	60.5	58.66
CDY09549	Canola	nucleus	63.66	56.64
CDX77578	Canola	cytosol	61.97	55.45
Bra026229.1-P	Field mustard	cytosol	61.97	55.45
CDY50723	Canola	nucleus	61.13	54.91
AT1G30690.2	Thale cress	cytosol	61.34	54.07
GSMUA_Achr9P30580_001	Banana	cytosol	61.76	54.04
EER88801	Sorghum	cytosol	55.88	50.96
VIT_07s0005g03430.t01	Wine grape	cytosol	47.48	50.33
Zm00001d046995_P001	Maize	plasma membrane	55.25	49.72
VIT_19s0085g00280.t01	Wine grape	cytosol	58.61	49.47
HORVU7Hr1G107070.1	Barley	cytosol	53.78	47.32
TraesCS7A01G466800.1	Wheat	cytosol	52.52	45.05
TraesCS7B01G368100.1	Wheat	nucleus	52.73	44.35
TraesCS7D01G454600.1	Wheat	cytosol	53.15	44.23
VIT_07s0031g03220.t01	Wine grape	cytosol	47.69	43.49
VIT_01s0137g00470.t01	Wine grape	cytosol	13.87	43.14
Os06t0671800-01	Rice	endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, plastid, vacuole	32.77	42.98
VIT_08s0058g00640.t01	Wine grape	cytosol, mitochondrion, nucleus	40.13	42.54
VIT_05s0029g01570.t01	Wine grape	cytosol	33.4	39.55
VIT_18s0041g00430.t01	Wine grape	cytosol	48.53	38.12
VIT_18s0041g00420.t01	Wine grape	cytosol	45.17	36.94

Protein Annotations

EntrezGene:100262778	wikigene:100262778	Gene3D:2.60.120.680	Gene3D:3.40.525.10	MapMan:35.1	EMBL:AM473362
ProteinID:CAN83643	ProteinID:CAN83643.1	ProteinID:CCB55880	ProteinID:CCB55880.1	InterPro:CRAL-TRIO_dom	InterPro:CRAL-TRIO_dom_sf
InterPro:CRAL/TRIO_N_dom	InterPro:CRAL/TRIO_N_dom_sf	ncoils:Coil	UniProt:F6HM05	EMBL:FN595992	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0005886
GO:GO:0016020	InterPro:GOLD_dom	InterPro:GOLD_dom_sf	InterPro:IPR001251	InterPro:IPR009038	InterPro:IPR036865
EntrezGene:LOC100262778	wikigene:LOC100262778	PFAM:PF00650	PFAM:PF03765	PFscan:PS50191	PFscan:PS50866
PANTHER:PTHR23324	PANTHER:PTHR23324:SF139	SMART:SM00516	SMART:SM01100	SUPFAM:SSF101576	SUPFAM:SSF46938
SUPFAM:SSF52087	UniParc:UPI000210A171	ArrayExpress:VIT_10s0003g05480	EnsemblPlantsGene:VIT_10s0003g05480	EnsemblPlants:VIT_10s0003g05480.t01	unigene:Vvi.17566
RefSeq:XP_002268764	RefSeq:XP_002268764.1	RefSeq:XP_003633046	RefSeq:XP_003633046.1	SEG:seg	:

Description

No Description!

Coordinates

chr10:-:10149996..10152002

Molecular Weight (calculated)

54332.5 Da

IEP (calculated)

4.772

GRAVY (calculated)

-0.628

Length

476 amino acids

Sequence
(BLAST)

001: MTEVSVSLPE EEKAVEKVNE AKPKTVEKSS SYREESNFLS DLKDNENKAL IELRSKLEEA ILRNTLFKKE ELKKETASEP KEEQPAAAEE KEKEPEATDG
101: AAPEEAEPKT EGEDKQSSSE VEKPEEVVDR DITLWGVPLL PSKCAEGNDV ILLKFLRARE FKVNEAFEML KKTLEWRKEF KTDSILEEEL GQDISSVAYM
201: NGVDREGHPI CYNIYGVLEN QELYQKTFGT EEKRNQFLRW RIQLMEKGIQ KLDFKPGGVT SLLQINDLSN SPGPSKKEIR IATKQAVGLL QDNYPEFVAR
301: NIFINVPFWY YALNALLSPF LTQRTKSKFV FVRPSKVTET LLKYICVEEI PVQYGGLKRE KDTEFSIEDG GVTELVVKAG STETIEIPVP EVGTTLVWDL
401: TVLGWEVNYK EEFVPADEGS YTIIIQKGKK MGSQEEPVRN SFRNNEPGKV VLTIENSVSK KKRIFYRYKT KNCSSF

Best Arabidopsis Sequence Match ( AT1G30690.2 )
(BLAST)

001: MTAEVKVEEK QVESEVVIAP AVVPEETTVK AVVEETKVEE DESKPEGVEK SASFKEESDF FADLKESEKK ALSDLKSKLE EAIVDNTLLK TKKKESSPMK
101: EKKEEVVKPE AEVEKKKEEA AEEKVEEEKK SEAVVTEEAP KAETVEAVVT EEIIPKEEVT TVVEKVEEET KEEEKKTEDV VTEEVKAETI EVEDEDESVD
201: KDIELWGVPL LPSKGAESTD VILLKFLRAR DFKVNEAFEM LKKTLKWRKQ NKIDSILGEE FGEDLATAAY MNGVDRESHP VCYNVHSEEL YQTIGSEKNR
301: EKFLRWRFQL MEKGIQKLNL KPGGVTSLLQ IHDLKNAPGV SRTEIWVGIK KVIETLQDNY PEFVSRNIFI NVPFWFYAMR AVLSPFLTQR TKSKFVVARP
401: AKVRETLLKY IPADELPVQY GGFKTVDDTE FSNETVSEVV VKPGSSETIE IPAPETEGTL VWDIAVLGWE VNYKEEFVPT EEGAYTVIVQ KVKKMGANEG
501: PIRNSFKNSQ AGKIVLTVDN VSGKKKKVLY RYRTKTESSS

Arabidopsis Description

PATL4Patellin-4 [Source:UniProtKB/Swiss-Prot;Acc:Q94C59]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.