Factsheet for VIT_18s0041g00430.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_09s0002g09040.t01	Wine grape	cytosol	15.35	81.58
KRG99105	Soybean	cytosol	17.0	69.59
GSMUA_Achr2P08100_001	Banana	cytosol	44.88	68.51
VIT_07s0031g03220.t01	Wine grape	cytosol	54.13	62.84
CDY58916	Canola	cytosol	13.86	60.87
Zm00001d005249_P001	Maize	mitochondrion	27.56	60.29
HORVU3Hr1G082150.1	Barley	cytosol	34.16	60.17
GSMUA_Achr9P08580_001	Banana	cytosol, plasma membrane	45.05	59.87
Zm00001d041705_P001	Maize	cytosol, mitochondrion	10.4	58.88
GSMUA_Achr7P23220_001	Banana	cytosol	48.18	58.4
Zm00001d043169_P001	Maize	cytosol	20.3	58.29
Zm00001d005304_P001	Maize	mitochondrion	26.07	58.09
KRH23751	Soybean	endoplasmic reticulum	57.26	57.26
KRH44929	Soybean	endoplasmic reticulum	53.63	56.42
GSMUA_Achr6P18780_001	Banana	cytosol	53.96	56.38
GSMUA_Achr6P07270_001	Banana	cytosol, nucleus, plastid	46.7	54.42
Solyc11g051160.1.1	Tomato	extracellular, plastid	52.48	53.99
Zm00001d012254_P003	Maize	mitochondrion	49.34	53.78
PGSC0003DMT400013297	Potato	cytosol	50.66	53.21
Solyc06g064940.2.1	Tomato	nucleus	50.49	52.76
KXG33790	Sorghum	cytosol	51.32	52.71
GSMUA_Achr3P22170_001	Banana	cytosol	45.71	52.66
VIT_05s0029g01570.t01	Wine grape	cytosol	34.82	52.49
Os05t0429400-01	Rice	plasma membrane	50.49	52.31
Zm00001d042664_P001	Maize	plasma membrane	49.01	52.01
EES10230	Sorghum	cytosol	43.89	51.95
TraesCS3B01G417500.1	Wheat	golgi	49.01	51.38
TraesCS3A01G385300.1	Wheat	cytosol	48.84	51.21
GSMUA_Achr5P25970_001	Banana	cytosol	46.86	51.17
VIT_18s0041g00420.t01	Wine grape	cytosol	48.68	50.69
TraesCS3D01G378300.1	Wheat	cytosol	48.84	50.43
Os01t0874700-01	Rice	plasma membrane	50.99	50.41
TraesCS1B01G279200.1	Wheat	cytosol	50.49	50.16
TraesCS1D01G268600.1	Wheat	golgi	50.16	49.84
TraesCS1A01G268500.1	Wheat	cytosol	50.0	49.67
Bra008012.1-P	Field mustard	cytosol	45.71	49.29
Bra016084.1-P	Field mustard	cytosol	45.21	49.1
CDY03655	Canola	cytosol	45.71	49.03
CDX68279	Canola	cytosol	42.74	48.78
CDX96377	Canola	cytosol	44.55	48.56
Zm00001d038262_P001	Maize	plasma membrane	49.67	48.55
VIT_10s0003g05480.t01	Wine grape	cytosol	38.12	48.53
CDX82182	Canola	cytosol	45.71	48.17
AT1G72150.1	Thale cress	cytosol	45.54	48.17
OQU78068	Sorghum	cytosol	41.75	48.1
GSMUA_Achr11P...	Banana	cytosol, endoplasmic reticulum, plastid	49.34	47.84
Zm00001d010205_P002	Maize	cytosol	41.09	46.2
Bra003892.1-P	Field mustard	cytosol	39.77	46.17
HORVU1Hr1G075150.4	Barley	plasma membrane	50.16	45.78
HORVU3Hr1G082110.2	Barley	plastid	48.68	45.74
CDY71842	Canola	cytosol	35.81	45.11
CDY71835	Canola	cytosol	21.29	45.1
VIT_01s0137g00470.t01	Wine grape	cytosol	11.39	45.1
VIT_08s0058g00640.t01	Wine grape	cytosol, mitochondrion, nucleus	31.19	42.09
VIT_07s0005g03430.t01	Wine grape	cytosol	30.03	40.53
VIT_19s0085g00280.t01	Wine grape	cytosol	37.13	39.89
AT1G22530.1	Thale cress	cytosol	44.06	39.09
Bra040854.1-P	Field mustard	cytosol	44.88	38.53
CDY21368	Canola	cytosol	40.92	38.04
CDY66581	Canola	cytosol	37.95	36.74

Protein Annotations

EntrezGene:100246049	wikigene:100246049	Gene3D:3.40.525.10	MapMan:35.1	EMBL:AM434142	ProteinID:CAN80424
ProteinID:CAN80424.1	ProteinID:CCB61730	ProteinID:CCB61730.1	InterPro:CRAL-TRIO_dom	InterPro:CRAL-TRIO_dom_sf	InterPro:CRAL/TRIO_N_dom
InterPro:CRAL/TRIO_N_dom_sf	ncoils:Coil	UniProt:F6I407	EMBL:FN596744	InterPro:GOLD_dom	InterPro:GOLD_dom_sf
InterPro:IPR001251	InterPro:IPR009038	InterPro:IPR036865	EntrezGene:LOC100246049	wikigene:LOC100246049	PFAM:PF00650
PFAM:PF03765	PFscan:PS50191	PFscan:PS50866	PANTHER:PTHR23324	PANTHER:PTHR23324:SF48	SMART:SM00516
SMART:SM01100	SUPFAM:SSF101576	SUPFAM:SSF46938	SUPFAM:SSF52087	TIGR:TC60724	UniParc:UPI00015CCED0
ArrayExpress:VIT_18s0041g00430	EnsemblPlantsGene:VIT_18s0041g00430	EnsemblPlants:VIT_18s0041g00430.t01	unigene:Vvi.8074	RefSeq:XP_002267428	RefSeq:XP_002267428.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr18:-:24889200..24892081

Molecular Weight (calculated)

67758.3 Da

IEP (calculated)

4.396

GRAVY (calculated)

-0.546

Length

606 amino acids

Sequence
(BLAST)

001: MAEDGKKPVS EEAQKPVAEA SVVEEVVAVA EVTAPPPAVP EAEEAAEKLK EEEEVVEKLE EEVAAAEEEK PKVVEEGEKM TESVSFKEES NVVGDLPESQ
101: RKALEELKVL VREALEKHEF TAPPPPPPPP AKEEEKAPAT EEEPKTEAPA EPAPEVVCPP PVEESEKKEE KEEEKKEEEK KEEEKKEEEK VAPPEPAEPV
201: VVAAVVETVT AVVVDEDGTK TVEAIEETIV VAPPAPPAEE AAAVVEEVTP PPPAEEVPPP PPPPPEEVEI WGIKLFDDDR TDVVLLKFLR ARDFKPKEAL
301: TMLKNTVLWR KSFGIETLLG DDLGTHLESV VFMEGSGKEG HPVCYNAYGK FLNKELYQNT FSDEEKRQNF LRWRIQFLEK SIRKLDFSPN GINTIIQVND
401: LKNSPGPFKR ELRQSTNQAL HLLQDNYPEF VAKQIFINVP WWYLAFNRMI SPFLTQRTKS KFVFAGPSKS AETLFKYIAP EQVPVQYGGL KRDGDTEFSI
501: CDPVTLVTIK PGCKHVIEFP YSEPCQLIWE LRVIGWDVTY GAEFVPTVEG GYTVIVQKAR KIAPTDEPVI SNSFKIGEPG KVILTIDNQT SKKKKLLYRS
601: KTQPCD

Best Arabidopsis Sequence Match ( AT4G09160.1 )
(BLAST)

001: MSQDSATTTP PPPLTSDVSM PSGEEDEPKH VTSEEEAPVT SETNLKLPLM PELEESNHTA EVVSEKVTPE TMTLESEGLN HAAEDSEQTH EVTPETETAK
101: LEVLNHTAED SEQTHEVTPE KETVKSEFLN HVAEDSEQTH EVTPETETVK SEVLNHAAED SEQPRGVTPT PETETSEADT SLLVTSETEE PNHAAEDYSE
201: TEPSQKLMLE QRRKYMEVED WTEPELPDEA VLEAAASVPE PKQPEPQTPP PPPSTTTSTV ASRSLAEMMN REEAEVEEKQ KIQIPRSLGS FKEETNKISD
301: LSETELNALQ ELRHLLQVSQ DSSKTSIWGV PLLKDDRTDV VLLKFLRARD FKPQEAYSML NKTLQWRIDF NIEELLDENL GDDLDKVVFM QGQDKENHPV
401: CYNVYGEFQN KDLYQKTFSD EEKRERFLRW RIQFLEKSIR NLDFVAGGVS TICQVNDLKN SPGPGKTELR LATKQALHLL QDNYPEFVSK QIFINVPWWY
501: LAFYRIISPF MSQRSKSKLV FAGPSRSAET LLKYISPEHV PVQYGGLSVD NCECNSDFTH DDIATEITVK PTTKQTVEII VYEKCTIVWE IRVVGWEVSY
601: GAEFVPENKE GYTVIIQKPR KMTAKNELVV SHSFKVGEVG RILLTVDNPT STKKMLIYRF KVKPLACE

Arabidopsis Description

PATL5Patellin-5 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0R2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.