Factsheet for VIT_01s0137g00470.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_09s0002g09040.t01	Wine grape	cytosol	33.33	44.74
Zm00001d052665_P001	Maize	cytosol	54.25	41.09
CDX73635	Canola	cytosol, plastid	67.97	37.55
CDY29572	Canola	cytosol, plastid	67.97	37.55
CDX78958	Canola	cytosol, plastid	67.97	37.55
CDY13832	Canola	cytosol, plastid	67.97	37.55
VIT_08s0058g00640.t01	Wine grape	cytosol, mitochondrion, nucleus	81.7	27.84
KRH76050	Soybean	cytosol	74.51	27.08
Solyc09g015080.2.1	Tomato	cytosol, plastid	74.51	26.89
PGSC0003DMT400030364	Potato	plastid	73.86	26.53
AT3G51670.1	Thale cress	cytosol	70.59	26.41
KRH65546	Soybean	cytosol	72.55	26.37
Bra036782.1-P	Field mustard	cytosol, plastid	68.63	25.49
CDX78026	Canola	cytosol, plastid	68.63	25.49
CDX73705	Canola	cytosol, plastid	68.63	25.49
KRH00348	Soybean	cytosol	70.59	24.83
GSMUA_Achr5P07450_001	Banana	plastid	62.09	23.99
GSMUA_Achr9P17890_001	Banana	cytosol	61.44	23.86
Bra012843.1-P	Field mustard	cytosol	67.97	23.53
EES18028	Sorghum	plastid	64.71	22.97
TraesCS1D01G202700.1	Wheat	plastid	63.4	22.93
TraesCS1A01G198900.1	Wheat	plastid	62.75	22.7
TraesCS1B01G213900.1	Wheat	plastid	62.75	22.7
GSMUA_Achr2P18920_001	Banana	plastid	62.09	22.51
Zm00001d038005_P001	Maize	mitochondrion, plastid	62.75	22.43
GSMUA_Achr3P09950_001	Banana	plastid	61.44	22.17
CDX90637	Canola	cytosol	56.86	21.64
Os05t0345100-00	Rice	plastid	40.52	19.87
Zm00001d010049_P001	Maize	plastid	62.75	19.12
VIT_05s0029g01570.t01	Wine grape	cytosol	45.75	17.41
CDY29036	Canola	cytosol, endoplasmic reticulum, mitochondrion, nucleus	56.86	14.6
VIT_10s0003g05480.t01	Wine grape	cytosol	43.14	13.87
VIT_07s0005g03430.t01	Wine grape	cytosol	39.22	13.36
VIT_07s0031g03220.t01	Wine grape	cytosol	45.1	13.22
VIT_18s0041g00420.t01	Wine grape	cytosol	46.41	12.2
VIT_18s0041g00430.t01	Wine grape	cytosol	45.1	11.39
VIT_19s0085g00280.t01	Wine grape	cytosol	39.87	10.82
HORVU1Hr1G051510.3	Barley	plastid	21.57	7.05
Os05t0345175-01	Rice	cytosol	0.0	0.0

Protein Annotations

ArrayExpress:VIT_01s0137g00470	EMBL:FN594954	EnsemblPlants:VIT_01s0137g00470.t01	EnsemblPlantsGene:VIT_01s0137g00470	Gene3D:3.40.525.10	InterPro:CRAL-TRIO_dom
InterPro:CRAL-TRIO_dom_sf	InterPro:IPR001251	InterPro:IPR036865	PANTHER:PTHR23324	PANTHER:PTHR23324:SF57	PFAM:PF00650
ProteinID:CCB44000	ProteinID:CCB44000.1	SUPFAM:SSF52087	UniParc:UPI00021080BF	UniProt:F6GVN7	MapMan:35.1

Description

No Description!

Coordinates

chr1:-:6985315..6985913

Molecular Weight (calculated)

17619.4 Da

IEP (calculated)

8.314

GRAVY (calculated)

-0.337

Length

153 amino acids

Sequence
(BLAST)

001: MLEKCLAWRK EFRADDVAEE DLGFKELEGV VAYMHGYDRE EHPVCYNAYG VFKDKDMYEG IFGDEEKLKK FLRWRVQVLV LERGIKLLHF KPGGVNSIIQ
101: VTDLKDMPKR ELRVSSNQIL LSSKIIIQKW LPGRFSSTSP GTSASCIQCS VRS

Best Arabidopsis Sequence Match ( AT3G51670.1 )
(BLAST)

001: MDASLSPFDH QKTQNTEPKK SFITSLITLR SNNIKEDTYF VSELKPTEQK SLQELKEKLS ASSSKASSMW GVSLLGGDDK ADVILLKFLR ARDFKVADSL
101: RMLEKCLEWR EEFKAEKLTE EDLGFKDLEG KVAYMRGYDK EGHPVCYNAY GVFKEKEMYE RVFGDEEKLN KFLRWRVQVL ERGVKMLHFK PGGVNSIIQV
201: TDLKDMPKRE LRVASNQILS LFQDNYPELV ATKIFINVPW YFSVIYSMFS PFLTQRTKSK FVMSKEGNAA ETLYKFIRPE DIPVQYGGLS RPTDSQNGPP
301: KPASEFSIKG GEKVNIQIEG IEGGATITWD IVVGGWDLEY SAEFVPNAEE SYAIVVEKPK KMKATDEAVC NSFTTVEAGK LILSVDNTLS RKKKVAAYRY
401: TVRKSTTTV

Arabidopsis Description

PATL6Patellin-6 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCU1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.