CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 8
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os05t0345175-01	Rice	cytosol	16.94	92.41
TraesCS1A01G198900.1	Wheat	plastid	87.7	89.36
TraesCS1D01G202700.1	Wheat	plastid	87.47	89.13
TraesCS1B01G213900.1	Wheat	plastid	87.47	89.13
Os05t0345100-00	Rice	plastid	60.79	83.97
Zm00001d010049_P001	Maize	plastid	95.82	82.27
GSMUA_Achr5P07450_001	Banana	plastid	70.07	76.26
GSMUA_Achr9P17890_001	Banana	cytosol	67.98	74.37
GSMUA_Achr2P18920_001	Banana	plastid	71.93	73.46
GSMUA_Achr3P09950_001	Banana	plastid	69.84	70.99
CDX78026	Canola	cytosol, plastid	63.57	66.5
Bra036782.1-P	Field mustard	cytosol, plastid	63.57	66.5
Solyc09g015080.2.1	Tomato	cytosol, plastid	64.97	66.04
CDX73705	Canola	cytosol, plastid	63.11	66.02
PGSC0003DMT400030364	Potato	plastid	65.2	65.96
CDY29572	Canola	cytosol, plastid	42.23	65.7
CDX73635	Canola	cytosol, plastid	42.23	65.7
CDX78958	Canola	cytosol, plastid	42.23	65.7
CDY13832	Canola	cytosol, plastid	42.23	65.7
KRH00348	Soybean	cytosol	65.89	65.29
KRH65546	Soybean	cytosol	63.57	65.08
KRH76050	Soybean	cytosol	63.57	65.08
VIT_01s0137g00470.t01	Wine grape	cytosol	22.97	64.71
AT3G51670.1	Thale cress	cytosol	61.25	64.55
VIT_08s0058g00640.t01	Wine grape	cytosol, mitochondrion, nucleus	65.89	63.25
CDX90637	Canola	cytosol	56.61	60.7
Bra012843.1-P	Field mustard	cytosol	59.4	57.92
CDY29036	Canola	cytosol, endoplasmic reticulum, mitochondrion, nucleus	56.61	40.94
HORVU1Hr1G051510.3	Barley	plastid	41.3	38.03
EER88801	Sorghum	cytosol	42.92	35.44
EES10230	Sorghum	cytosol	39.44	33.2
KXG33790	Sorghum	cytosol	42.92	31.36
OQU78068	Sorghum	cytosol	37.35	30.61

Protein Annotations

Gene3D:3.40.525.10	MapMan:35.1	EntrezGene:8066780	UniProt:C5YW82	InterPro:CRAL-TRIO_dom	InterPro:CRAL-TRIO_dom_sf
InterPro:CRAL/TRIO_N_dom	InterPro:CRAL/TRIO_N_dom_sf	EnsemblPlants:EES18028	ProteinID:EES18028	ProteinID:EES18028.1	GO:GO:0005575
GO:GO:0005623	GO:GO:0005886	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021
InterPro:GOLD_dom	InterPro:GOLD_dom_sf	InterPro:IPR001251	InterPro:IPR009038	InterPro:IPR036865	PFAM:PF00650
PFAM:PF03765	PFscan:PS50191	PFscan:PS50866	PANTHER:PTHR23324	PANTHER:PTHR23324:SF57	SMART:SM00516
SMART:SM01100	EnsemblPlantsGene:SORBI_3009G101100	SUPFAM:SSF101576	SUPFAM:SSF46938	SUPFAM:SSF52087	unigene:Sbi.9230
UniParc:UPI0001A88BD1	RefSeq:XP_002439598.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr9:+:40042511..40046912

Molecular Weight (calculated)

47537.9 Da

IEP (calculated)

7.132

GRAVY (calculated)

-0.167

Length

431 amino acids

Sequence
(BLAST)

001: MSPTTTPSPA PVAAPASKGA KRSLMSSLMD ATALLRSSSF KEDSYVAAAL PSSELRALAD LKALLATHPD PISIWGVPLN PHSPPAAADD AAPAPTPAPV
101: DERADVVLLK FLRARDFRVR DAHAMLLRCA AWRAEFGADA VLDEDLGFKD LEGVVAYMHG WDRDGHPVCY NAYGVFKDRD MYERVFGDGD RLSRFLRWRV
201: QVMERGVRAL TLRPGGVNAI IQVTDLKDMP KRELRAASNQ ILSLFQDNYP EMVARKVFIN VPWYFSVLFS MISPFLTERT KSKFVIAREG NVAETLYKFI
301: RPELVPVQYG GLSRAGDLEN GPPKPASEFT IKGGEKVFLE IDGIEAGATI TWDLVVGGWD LEYGAEYVPA AEDSYTLCVE KTRMVSATAD EPVHNAFTAR
401: EAGKMVLSID NSGSRKRKVA AYRYFVRKPS V

Best Arabidopsis Sequence Match ( AT3G51670.1 )
(BLAST)

001: MDASLSPFDH QKTQNTEPKK SFITSLITLR SNNIKEDTYF VSELKPTEQK SLQELKEKLS ASSSKASSMW GVSLLGGDDK ADVILLKFLR ARDFKVADSL
101: RMLEKCLEWR EEFKAEKLTE EDLGFKDLEG KVAYMRGYDK EGHPVCYNAY GVFKEKEMYE RVFGDEEKLN KFLRWRVQVL ERGVKMLHFK PGGVNSIIQV
201: TDLKDMPKRE LRVASNQILS LFQDNYPELV ATKIFINVPW YFSVIYSMFS PFLTQRTKSK FVMSKEGNAA ETLYKFIRPE DIPVQYGGLS RPTDSQNGPP
301: KPASEFSIKG GEKVNIQIEG IEGGATITWD IVVGGWDLEY SAEFVPNAEE SYAIVVEKPK KMKATDEAVC NSFTTVEAGK LILSVDNTLS RKKKVAAYRY
401: TVRKSTTTV

Arabidopsis Description

PATL6Patellin-6 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCU1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.