Factsheet for TraesCS1B01G213900.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G198900.1	Wheat	plastid	98.58	98.58
TraesCS1D01G202700.1	Wheat	plastid	98.58	98.58
Os05t0345175-01	Rice	cytosol	17.49	93.67
Zm00001d052665_P001	Maize	cytosol	42.79	89.6
EES18028	Sorghum	plastid	89.13	87.47
Zm00001d038005_P001	Maize	mitochondrion, plastid	85.82	84.81
Os05t0345100-00	Rice	plastid	60.76	82.37
Zm00001d010049_P001	Maize	plastid	88.42	74.5
GSMUA_Achr5P07450_001	Banana	plastid	66.43	70.96
GSMUA_Achr9P17890_001	Banana	cytosol	65.25	70.05
GSMUA_Achr2P18920_001	Banana	plastid	69.5	69.67
GSMUA_Achr3P09950_001	Banana	plastid	66.9	66.75
Solyc09g015080.2.1	Tomato	cytosol, plastid	63.36	63.21
PGSC0003DMT400030364	Potato	plastid	63.59	63.15
CDX78026	Canola	cytosol, plastid	61.23	62.86
Bra036782.1-P	Field mustard	cytosol, plastid	61.23	62.86
VIT_01s0137g00470.t01	Wine grape	cytosol	22.7	62.75
CDX73705	Canola	cytosol, plastid	60.76	62.38
KRH65546	Soybean	cytosol	61.94	62.23
KRH76050	Soybean	cytosol	61.94	62.23
KRH00348	Soybean	cytosol	63.59	61.84
CDY29572	Canola	cytosol, plastid	40.43	61.73
CDY13832	Canola	cytosol, plastid	40.43	61.73
CDX78958	Canola	cytosol, plastid	40.43	61.73
CDX73635	Canola	cytosol, plastid	40.43	61.73
AT3G51670.1	Thale cress	cytosol	58.87	60.88
VIT_08s0058g00640.t01	Wine grape	cytosol, mitochondrion, nucleus	62.88	59.24
CDX90637	Canola	cytosol	54.14	56.97
Bra012843.1-P	Field mustard	cytosol	57.92	55.43
HORVU1Hr1G051510.3	Barley	plastid	43.74	39.53
CDY29036	Canola	cytosol, endoplasmic reticulum, mitochondrion, nucleus	53.9	38.26
TraesCS3B01G417500.1	Wheat	golgi	42.55	31.14
TraesCS1B01G279200.1	Wheat	cytosol	44.21	30.66
TraesCS7B01G368100.1	Wheat	nucleus	40.66	30.39

Protein Annotations

Gene3D:3.40.525.10	MapMan:35.1	InterPro:CRAL-TRIO_dom	InterPro:CRAL-TRIO_dom_sf	InterPro:CRAL/TRIO_N_dom	InterPro:CRAL/TRIO_N_dom_sf
GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0016020	InterPro:GOLD_dom	InterPro:GOLD_dom_sf
InterPro:IPR001251	InterPro:IPR009038	InterPro:IPR036865	PFAM:PF00650	PFAM:PF03765	PFscan:PS50191
PFscan:PS50866	PANTHER:PTHR23324	PANTHER:PTHR23324:SF57	SMART:SM00516	SMART:SM01100	SUPFAM:SSF101576
SUPFAM:SSF46938	SUPFAM:SSF52087	EnsemblPlantsGene:TraesCS1B01G213900	EnsemblPlants:TraesCS1B01G213900.1	TIGR:cd00170	SEG:seg

Description

No Description!

Coordinates

chr1B:+:388382085..388385479

Molecular Weight (calculated)

46778.2 Da

IEP (calculated)

8.939

GRAVY (calculated)

-0.198

Length

423 amino acids

Sequence
(BLAST)

001: MSPTTAASPA PAPATDAPPK PSPGAKRSLM GSLIDATALL RAASFKEDSY VAAALPASDL RALADLRALL ATHPDQISIW GVPLNPPSDA PADERTDVVL
101: LKFLRARDFR VRDAHAMLLR CAAWRAEFRA DAVLDEDPGF KDLEGIVAYM HGWDREGHPV CYNAYGVFKD RDMYNRVFGD GDRLSRFLRW RVQIMERGVR
201: ALQLRPGGVN AIIQVTDLKD MPKRELRAAS NQILSLFQDN YPEMVARKVF VNVPWYFSVL FSMISPFLTE RTKSKFVIAR EGNVAETLFK FIRPELVPVQ
301: YGGLSRASEL ENGPPKPASE FTIKGGEKVF LEIDGIEAGA TITWDLVVGG WELEYGAEYV PAAEGGYTLC VERTRKVPAA AAEPVHNAFT AKEPGKMVLS
401: IDNSGSRKRK VAAYRYFVRK PSA

Best Arabidopsis Sequence Match ( AT3G51670.1 )
(BLAST)

001: MDASLSPFDH QKTQNTEPKK SFITSLITLR SNNIKEDTYF VSELKPTEQK SLQELKEKLS ASSSKASSMW GVSLLGGDDK ADVILLKFLR ARDFKVADSL
101: RMLEKCLEWR EEFKAEKLTE EDLGFKDLEG KVAYMRGYDK EGHPVCYNAY GVFKEKEMYE RVFGDEEKLN KFLRWRVQVL ERGVKMLHFK PGGVNSIIQV
201: TDLKDMPKRE LRVASNQILS LFQDNYPELV ATKIFINVPW YFSVIYSMFS PFLTQRTKSK FVMSKEGNAA ETLYKFIRPE DIPVQYGGLS RPTDSQNGPP
301: KPASEFSIKG GEKVNIQIEG IEGGATITWD IVVGGWDLEY SAEFVPNAEE SYAIVVEKPK KMKATDEAVC NSFTTVEAGK LILSVDNTLS RKKKVAAYRY
401: TVRKSTTTV

Arabidopsis Description

PATL6Patellin-6 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCU1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.